Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC58Q4VC31 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC58Q4VC31 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 KRT18P24-201ENST00000344739 1156 ntBASIC19.56■□□□□ 0.72
CCDC58Q4VC31 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 AC139795.1-202ENST00000500444 432 ntBASIC19.56■□□□□ 0.72
CCDC58Q4VC31 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC58Q4VC31 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 KRT18P60-201ENST00000312876 1297 ntBASIC19.55■□□□□ 0.72
CCDC58Q4VC31 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC58Q4VC31 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 AC087742.1-201ENST00000575880 1738 ntBASIC19.54■□□□□ 0.72
CCDC58Q4VC31 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 AC144652.1-201ENST00000609974 1624 ntBASIC19.54■□□□□ 0.72
CCDC58Q4VC31 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC58Q4VC31 AC080038.3-201ENST00000623346 1952 ntBASIC19.53■□□□□ 0.72
CCDC58Q4VC31 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 MIR4281-201ENST00000580852 62 ntBASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC58Q4VC31 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CCDC58Q4VC31 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC58Q4VC31 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC58Q4VC31 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC58Q4VC31 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC58Q4VC31 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms