Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 AC022616.5-201ENST00000518796 181 ntBASIC19.84■□□□□ 0.77
ZNF404Q494X3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNF404Q494X3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF404Q494X3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF404Q494X3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF404Q494X3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF404Q494X3 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF404Q494X3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
ZNF404Q494X3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF404Q494X3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF404Q494X3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF404Q494X3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.83■□□□□ 0.77
ZNF404Q494X3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNF404Q494X3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF404Q494X3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF404Q494X3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF404Q494X3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF404Q494X3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNF404Q494X3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF404Q494X3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNF404Q494X3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ZNF404Q494X3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF404Q494X3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF404Q494X3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ZNF404Q494X3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ZNF404Q494X3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 AL592295.1-201ENST00000400984 884 ntBASIC19.81■□□□□ 0.76
ZNF404Q494X3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
ZNF404Q494X3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF404Q494X3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
ZNF404Q494X3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF404Q494X3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 AC079630.1-202ENST00000618127 1840 ntBASIC19.79■□□□□ 0.76
ZNF404Q494X3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 AC005229.4-201ENST00000610085 2198 ntBASIC19.79■□□□□ 0.76
ZNF404Q494X3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF404Q494X3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ZNF404Q494X3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 FAM99A-202ENST00000538190 1989 ntBASIC19.78■□□□□ 0.76
ZNF404Q494X3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 AC103724.3-201ENST00000564481 992 ntBASIC19.78■□□□□ 0.76
ZNF404Q494X3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms