Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HSPG2P98160 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC13.88□□□□□ -0.19
HSPG2P98160 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HSPG2P98160 MYC-209ENST00000641252 345 ntBASIC13.88□□□□□ -0.19
HSPG2P98160 AP006294.2-201ENST00000641667 209 ntBASIC13.88□□□□□ -0.19
HSPG2P98160 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC13.88□□□□□ -0.19
HSPG2P98160 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HSPG2P98160 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
HSPG2P98160 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HSPG2P98160 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC13.88□□□□□ -0.19
HSPG2P98160 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HSPG2P98160 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HSPG2P98160 AC007322.1-201ENST00000426983 750 ntBASIC13.87□□□□□ -0.19
HSPG2P98160 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HSPG2P98160 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HSPG2P98160 ST7-202ENST00000323984 2142 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 ST7-207ENST00000393449 2127 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 RNA5SP413-201ENST00000516373 109 ntBASIC13.87□□□□□ -0.19
HSPG2P98160 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC13.87□□□□□ -0.19
HSPG2P98160 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC13.87□□□□□ -0.19
HSPG2P98160 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HSPG2P98160 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HSPG2P98160 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 STX4-202ENST00000394998 1498 ntTSL 2 BASIC13.87□□□□□ -0.19
HSPG2P98160 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC13.87□□□□□ -0.19
HSPG2P98160 SHF-207ENST00000560540 2062 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC13.87□□□□□ -0.19
HSPG2P98160 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC13.87□□□□□ -0.19
HSPG2P98160 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 PKM-203ENST00000389093 2279 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC13.86□□□□□ -0.19
HSPG2P98160 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.86□□□□□ -0.19
HSPG2P98160 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC13.86□□□□□ -0.19
HSPG2P98160 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC13.86□□□□□ -0.19
HSPG2P98160 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC13.86□□□□□ -0.19
HSPG2P98160 MMD2-204ENST00000612910 778 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 MIR6089-201ENST00000616698 64 ntBASIC13.86□□□□□ -0.19
HSPG2P98160 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC13.86□□□□□ -0.19
HSPG2P98160 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HSPG2P98160 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 AC073648.6-201ENST00000641589 218 ntBASIC13.86□□□□□ -0.19
HSPG2P98160 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC13.86□□□□□ -0.19
HSPG2P98160 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
HSPG2P98160 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC13.85□□□□□ -0.19
HSPG2P98160 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC13.85□□□□□ -0.19
HSPG2P98160 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC13.85□□□□□ -0.19
HSPG2P98160 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HSPG2P98160 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HSPG2P98160 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
HSPG2P98160 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC13.85□□□□□ -0.19
HSPG2P98160 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC13.85□□□□□ -0.19
HSPG2P98160 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC13.84□□□□□ -0.19
HSPG2P98160 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HSPG2P98160 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
HSPG2P98160 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
HSPG2P98160 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC13.84□□□□□ -0.19
HSPG2P98160 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HSPG2P98160 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC13.84□□□□□ -0.19
HSPG2P98160 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HSPG2P98160 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HSPG2P98160 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC13.83□□□□□ -0.19
HSPG2P98160 WDR88-203ENST00000592765 651 ntTSL 5 BASIC13.83□□□□□ -0.19
HSPG2P98160 AC010331.1-201ENST00000611423 582 ntBASIC13.83□□□□□ -0.19
HSPG2P98160 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC13.83□□□□□ -0.19
HSPG2P98160 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HSPG2P98160 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HSPG2P98160 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms