Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CLRN1P58418 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.59■□□□□ 0.73
CLRN1P58418 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CLRN1P58418 AC006455.2-201ENST00000429931 906 ntBASIC19.59■□□□□ 0.73
CLRN1P58418 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.59■□□□□ 0.73
CLRN1P58418 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.59■□□□□ 0.73
CLRN1P58418 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.59■□□□□ 0.73
CLRN1P58418 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CLRN1P58418 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CLRN1P58418 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN1P58418 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN1P58418 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CLRN1P58418 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN1P58418 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN1P58418 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN1P58418 GUSBP5-202ENST00000510805 1989 ntBASIC19.58■□□□□ 0.73
CLRN1P58418 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN1P58418 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.58■□□□□ 0.72
CLRN1P58418 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.58■□□□□ 0.72
CLRN1P58418 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN1P58418 AL499627.2-201ENST00000606283 725 ntBASIC19.58■□□□□ 0.72
CLRN1P58418 pRNA.6-201ENST00000610482 90 ntBASIC19.58■□□□□ 0.72
CLRN1P58418 pRNA.5-201ENST00000612139 90 ntBASIC19.58■□□□□ 0.72
CLRN1P58418 pRNA.11-201ENST00000618423 90 ntBASIC19.58■□□□□ 0.72
CLRN1P58418 pRNA.13-201ENST00000619112 90 ntBASIC19.58■□□□□ 0.72
CLRN1P58418 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN1P58418 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN1P58418 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLRN1P58418 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CLRN1P58418 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.57■□□□□ 0.72
CLRN1P58418 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.57■□□□□ 0.72
CLRN1P58418 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CLRN1P58418 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.57■□□□□ 0.72
CLRN1P58418 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CLRN1P58418 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CLRN1P58418 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CLRN1P58418 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLRN1P58418 LINC01960-201ENST00000563759 1884 ntBASIC19.56■□□□□ 0.72
CLRN1P58418 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CLRN1P58418 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.56■□□□□ 0.72
CLRN1P58418 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.56■□□□□ 0.72
CLRN1P58418 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLRN1P58418 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.56■□□□□ 0.72
CLRN1P58418 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.55■□□□□ 0.72
CLRN1P58418 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CLRN1P58418 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CLRN1P58418 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLRN1P58418 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms