Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.77■□□□□ 0.44
CDX1P47902 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX1P47902 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX1P47902 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX1P47902 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.77■□□□□ 0.44
CDX1P47902 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX1P47902 ECEL1P1-201ENST00000373592 1742 ntBASIC17.77■□□□□ 0.44
CDX1P47902 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDX1P47902 GUSBP5-202ENST00000510805 1989 ntBASIC17.77■□□□□ 0.43
CDX1P47902 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDX1P47902 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX1P47902 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CDX1P47902 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX1P47902 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CDX1P47902 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC17.76■□□□□ 0.43
CDX1P47902 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.76■□□□□ 0.43
CDX1P47902 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC17.76■□□□□ 0.43
CDX1P47902 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDX1P47902 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX1P47902 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 AL136116.3-201ENST00000402907 1138 ntBASIC17.75■□□□□ 0.43
CDX1P47902 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.75■□□□□ 0.43
CDX1P47902 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX1P47902 AC004812.2-201ENST00000611079 2094 ntBASIC17.75■□□□□ 0.43
CDX1P47902 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.74■□□□□ 0.43
CDX1P47902 AL391422.3-201ENST00000603791 2761 ntBASIC17.74■□□□□ 0.43
CDX1P47902 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.74■□□□□ 0.43
CDX1P47902 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 AL512631.2-201ENST00000604634 923 ntBASIC17.74■□□□□ 0.43
CDX1P47902 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CDX1P47902 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX1P47902 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CDX1P47902 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CDX1P47902 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.74■□□□□ 0.43
CDX1P47902 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.73■□□□□ 0.43
CDX1P47902 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.73■□□□□ 0.43
CDX1P47902 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.73■□□□□ 0.43
CDX1P47902 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX1P47902 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX1P47902 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX1P47902 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
CDX1P47902 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX1P47902 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX1P47902 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 MIR4466-201ENST00000606121 54 ntBASIC17.72■□□□□ 0.43
CDX1P47902 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX1P47902 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.72■□□□□ 0.43
CDX1P47902 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CDX1P47902 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CDX1P47902 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX1P47902 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
CDX1P47902 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX1P47902 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms