Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPL28P46779 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
RPL28P46779 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RPL28P46779 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 AL592295.1-201ENST00000400984 884 ntBASIC14.43□□□□□ -0.1
RPL28P46779 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RPL28P46779 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 FAM99A-202ENST00000538190 1989 ntBASIC14.43□□□□□ -0.1
RPL28P46779 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RPL28P46779 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPL28P46779 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC14.42□□□□□ -0.1
RPL28P46779 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC14.42□□□□□ -0.1
RPL28P46779 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC14.42□□□□□ -0.1
RPL28P46779 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC14.42□□□□□ -0.1
RPL28P46779 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
RPL28P46779 AC012354.3-201ENST00000623734 483 ntBASIC14.42□□□□□ -0.1
RPL28P46779 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RPL28P46779 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RPL28P46779 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPL28P46779 AC080038.3-201ENST00000623346 1952 ntBASIC14.42□□□□□ -0.1
RPL28P46779 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC14.41□□□□□ -0.1
RPL28P46779 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RPL28P46779 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 TSPY13P-201ENST00000338964 914 ntBASIC14.41□□□□□ -0.1
RPL28P46779 DUX4L18-201ENST00000553347 1267 ntBASIC14.41□□□□□ -0.1
RPL28P46779 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 AC074183.2-201ENST00000623112 922 ntBASIC14.41□□□□□ -0.1
RPL28P46779 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC14.41□□□□□ -0.1
RPL28P46779 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
RPL28P46779 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
RPL28P46779 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC14.41□□□□□ -0.1
RPL28P46779 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPL28P46779 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
RPL28P46779 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
RPL28P46779 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 AC005229.4-201ENST00000610085 2198 ntBASIC14.4□□□□□ -0.1
RPL28P46779 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
RPL28P46779 ATP5G2P3-201ENST00000429083 425 ntBASIC14.4□□□□□ -0.1
RPL28P46779 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
RPL28P46779 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPL28P46779 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms