Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HNF4AP41235 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
HNF4AP41235 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HNF4AP41235 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.27■■□□□ 1
HNF4AP41235 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
HNF4AP41235 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.26■□□□□ 0.99
HNF4AP41235 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 AC006455.2-201ENST00000429931 906 ntBASIC21.26■□□□□ 0.99
HNF4AP41235 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HNF4AP41235 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
HNF4AP41235 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
HNF4AP41235 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HNF4AP41235 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.25■□□□□ 0.99
HNF4AP41235 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HNF4AP41235 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.25■□□□□ 0.99
HNF4AP41235 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.25■□□□□ 0.99
HNF4AP41235 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.25■□□□□ 0.99
HNF4AP41235 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HNF4AP41235 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 AC004687.1-201ENST00000579003 1625 ntBASIC21.24■□□□□ 0.99
HNF4AP41235 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
HNF4AP41235 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HNF4AP41235 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
HNF4AP41235 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 AC242852.2-201ENST00000615738 1807 ntBASIC21.23■□□□□ 0.99
HNF4AP41235 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.23■□□□□ 0.99
HNF4AP41235 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
HNF4AP41235 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.23■□□□□ 0.99
HNF4AP41235 ECEL1P1-201ENST00000373592 1742 ntBASIC21.23■□□□□ 0.99
HNF4AP41235 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 AC087742.1-201ENST00000575880 1738 ntBASIC21.23■□□□□ 0.99
HNF4AP41235 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HNF4AP41235 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.23■□□□□ 0.99
HNF4AP41235 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
HNF4AP41235 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
HNF4AP41235 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.22■□□□□ 0.99
HNF4AP41235 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.22■□□□□ 0.99
HNF4AP41235 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.22■□□□□ 0.99
HNF4AP41235 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.22■□□□□ 0.99
HNF4AP41235 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.22■□□□□ 0.99
HNF4AP41235 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
HNF4AP41235 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HNF4AP41235 LINC01960-201ENST00000563759 1884 ntBASIC21.22■□□□□ 0.99
HNF4AP41235 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.21■□□□□ 0.99
HNF4AP41235 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HNF4AP41235 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.21■□□□□ 0.99
HNF4AP41235 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
HNF4AP41235 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HNF4AP41235 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
HNF4AP41235 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HNF4AP41235 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
HNF4AP41235 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HNF4AP41235 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.2■□□□□ 0.98
HNF4AP41235 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.2■□□□□ 0.98
HNF4AP41235 AC092171.4-201ENST00000609130 632 ntBASIC21.2■□□□□ 0.98
HNF4AP41235 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
HNF4AP41235 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HNF4AP41235 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HNF4AP41235 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms