Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
MSX2P35548 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.94■□□□□ 0.94
MSX2P35548 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
MSX2P35548 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
MSX2P35548 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
MSX2P35548 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.94■□□□□ 0.94
MSX2P35548 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
MSX2P35548 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX2P35548 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.94■□□□□ 0.94
MSX2P35548 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.93■□□□□ 0.94
MSX2P35548 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSX2P35548 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX2P35548 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX2P35548 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX2P35548 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSX2P35548 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX2P35548 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX2P35548 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
MSX2P35548 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX2P35548 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
MSX2P35548 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX2P35548 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MSX2P35548 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MSX2P35548 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSX2P35548 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.91■□□□□ 0.94
MSX2P35548 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX2P35548 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSX2P35548 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.9■□□□□ 0.94
MSX2P35548 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX2P35548 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.9■□□□□ 0.94
MSX2P35548 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.9■□□□□ 0.94
MSX2P35548 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.9■□□□□ 0.94
MSX2P35548 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSX2P35548 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
MSX2P35548 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSX2P35548 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
MSX2P35548 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.89■□□□□ 0.94
MSX2P35548 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.89■□□□□ 0.94
MSX2P35548 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
MSX2P35548 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.89■□□□□ 0.93
MSX2P35548 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.89■□□□□ 0.93
MSX2P35548 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
MSX2P35548 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.89■□□□□ 0.93
MSX2P35548 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX2P35548 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX2P35548 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX2P35548 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.88■□□□□ 0.93
MSX2P35548 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX2P35548 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
MSX2P35548 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MSX2P35548 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX2P35548 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
MSX2P35548 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX2P35548 AF131216.4-201ENST00000638924 1588 ntBASIC20.88■□□□□ 0.93
MSX2P35548 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
MSX2P35548 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
MSX2P35548 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.87■□□□□ 0.93
MSX2P35548 RNF126P1-201ENST00000567452 1320 ntBASIC20.87■□□□□ 0.93
MSX2P35548 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.87■□□□□ 0.93
MSX2P35548 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX2P35548 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
MSX2P35548 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSX2P35548 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
MSX2P35548 AL157384.1-201ENST00000445995 2473 ntBASIC20.86■□□□□ 0.93
MSX2P35548 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
MSX2P35548 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.86■□□□□ 0.93
MSX2P35548 MIR4449-201ENST00000578365 66 ntBASIC20.86■□□□□ 0.93
MSX2P35548 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.86■□□□□ 0.93
MSX2P35548 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms