Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS4BO75351 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS4BO75351 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
VPS4BO75351 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS4BO75351 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS4BO75351 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VPS4BO75351 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS4BO75351 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS4BO75351 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VPS4BO75351 AC144652.1-201ENST00000609974 1624 ntBASIC21.48■■□□□ 1.03
VPS4BO75351 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
VPS4BO75351 MIR5787-201ENST00000611784 55 ntBASIC21.48■■□□□ 1.03
VPS4BO75351 AC106739.1-201ENST00000617035 715 ntBASIC21.48■■□□□ 1.03
VPS4BO75351 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 AC092053.2-201ENST00000640557 1818 ntBASIC21.48■■□□□ 1.03
VPS4BO75351 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS4BO75351 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS4BO75351 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS4BO75351 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
VPS4BO75351 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS4BO75351 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS4BO75351 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS4BO75351 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS4BO75351 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VPS4BO75351 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS4BO75351 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS4BO75351 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS4BO75351 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS4BO75351 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS4BO75351 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS4BO75351 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS4BO75351 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VPS4BO75351 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.03
VPS4BO75351 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
VPS4BO75351 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.45■■□□□ 1.02
VPS4BO75351 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
VPS4BO75351 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS4BO75351 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.45■■□□□ 1.02
VPS4BO75351 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS4BO75351 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.02
VPS4BO75351 AC139530.1-201ENST00000575312 1977 ntBASIC21.45■■□□□ 1.02
VPS4BO75351 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
VPS4BO75351 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
VPS4BO75351 AL512631.2-201ENST00000604634 923 ntBASIC21.44■■□□□ 1.02
VPS4BO75351 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS4BO75351 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS4BO75351 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.43■■□□□ 1.02
VPS4BO75351 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS4BO75351 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms