Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.3■■□□□ 1
CNOT1A5YKK6 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CNOT1A5YKK6 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.3■■□□□ 1
CNOT1A5YKK6 AC133552.2-202ENST00000575694 574 ntBASIC21.3■■□□□ 1
CNOT1A5YKK6 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CNOT1A5YKK6 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CNOT1A5YKK6 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CNOT1A5YKK6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.29■■□□□ 1
CNOT1A5YKK6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CNOT1A5YKK6 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CNOT1A5YKK6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.28■■□□□ 1
CNOT1A5YKK6 AL596275.1-201ENST00000423464 877 ntBASIC21.28■■□□□ 1
CNOT1A5YKK6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
CNOT1A5YKK6 AC135731.1-201ENST00000569415 2548 ntBASIC21.28■■□□□ 1
CNOT1A5YKK6 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 DUSP5P2-201ENST00000426873 1033 ntBASIC21.28■■□□□ 1
CNOT1A5YKK6 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CNOT1A5YKK6 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 AL161729.1-201ENST00000604104 1402 ntBASIC21.27■■□□□ 1
CNOT1A5YKK6 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.27■■□□□ 1
CNOT1A5YKK6 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.27■■□□□ 1
CNOT1A5YKK6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.27■■□□□ 1
CNOT1A5YKK6 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.27■■□□□ 1
CNOT1A5YKK6 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CNOT1A5YKK6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
CNOT1A5YKK6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 AC104187.1-201ENST00000607510 612 ntBASIC21.26■□□□□ 0.99
CNOT1A5YKK6 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 MYCNOS-205ENST00000641950 531 ntBASIC21.26■□□□□ 0.99
CNOT1A5YKK6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNOT1A5YKK6 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 AC142381.4-202ENST00000563973 229 ntBASIC21.25■□□□□ 0.99
CNOT1A5YKK6 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.25■□□□□ 0.99
CNOT1A5YKK6 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 AC105036.2-201ENST00000569468 176 ntBASIC21.24■□□□□ 0.99
CNOT1A5YKK6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 KRT87P-202ENST00000534226 1464 ntBASIC21.24■□□□□ 0.99
CNOT1A5YKK6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNOT1A5YKK6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 AC092118.2-201ENST00000613495 667 ntBASIC21.23■□□□□ 0.99
CNOT1A5YKK6 AC092803.2-201ENST00000564287 1899 ntBASIC21.23■□□□□ 0.99
CNOT1A5YKK6 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.23■□□□□ 0.99
CNOT1A5YKK6 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.23■□□□□ 0.99
CNOT1A5YKK6 AC008550.1-201ENST00000511500 884 ntBASIC21.23■□□□□ 0.99
CNOT1A5YKK6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms