Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPS6-201ENST00000315377 863 ntTSL 3 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 NOS2P3-201ENST00000411468 867 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 RPSAP6-201ENST00000417882 882 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 NOS2P2-201ENST00000426269 867 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC138392.1-201ENST00000427577 921 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC012066.1-201ENST00000439252 694 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC012513.2-201ENST00000441511 1137 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 RN7SL340P-201ENST00000470792 296 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 RN7SL2-201ENST00000490232 300 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CD81-209ENST00000492627 886 ntTSL 3 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 BCAR1P1-201ENST00000553953 636 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 RN7SL4P-201ENST00000584058 295 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AL078624.1-201ENST00000604004 547 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PDLIM1P1-201ENST00000604187 969 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 RHPN1-AS1-201ENST00000518049 1918 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 DDC-204ENST00000426377 1700 ntTSL 3 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 DLX4-206ENST00000611342 1662 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AC026271.1-201ENST00000447794 1348 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 ABCD1P2-201ENST00000429313 1601 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 SNORA50C-201ENST00000408535 133 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AL049792.1-201ENST00000424708 1262 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 FTLP3-201ENST00000427242 528 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 EEF1DP2-201ENST00000433698 843 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 RN7SL452P-201ENST00000482923 291 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 RN7SL638P-201ENST00000494527 290 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AACSP1-202ENST00000521412 1095 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 SNORA50.1-201ENST00000628590 135 ntBASIC12.71□□□□□ -0.37
COL28A1Q2UY09 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL28A1Q2UY09 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
COL28A1Q2UY09 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL28A1Q2UY09 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms