Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA1Q9Y5I3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA1Q9Y5I3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PCDHA1Q9Y5I3 DUSP8P3-201ENST00000399571 1760 ntBASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 RARRES2P6-201ENST00000567333 442 ntBASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA1Q9Y5I3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
PCDHA1Q9Y5I3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA1Q9Y5I3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 AC026271.2-201ENST00000428091 497 ntBASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA1Q9Y5I3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 MIR572-201ENST00000384983 95 ntBASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
PCDHA1Q9Y5I3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 AL031602.1-201ENST00000633169 911 ntBASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
PCDHA1Q9Y5I3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 AC068587.7-201ENST00000641602 218 ntBASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA1Q9Y5I3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms