Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
USP42Q9H9J4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.3■■■□□ 2.12
USP42Q9H9J4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP42Q9H9J4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.29■■■□□ 2.12
USP42Q9H9J4 CDCA4P2-201ENST00000441182 718 ntBASIC28.29■■■□□ 2.12
USP42Q9H9J4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.29■■■□□ 2.12
USP42Q9H9J4 AC073111.5-205ENST00000641717 521 ntBASIC28.29■■■□□ 2.12
USP42Q9H9J4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
USP42Q9H9J4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.29■■■□□ 2.12
USP42Q9H9J4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP42Q9H9J4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
USP42Q9H9J4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
USP42Q9H9J4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
USP42Q9H9J4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
USP42Q9H9J4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.28■■■□□ 2.12
USP42Q9H9J4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
USP42Q9H9J4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.28■■■□□ 2.12
USP42Q9H9J4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.27■■■□□ 2.12
USP42Q9H9J4 TPRG1LP1-201ENST00000598702 760 ntBASIC28.27■■■□□ 2.12
USP42Q9H9J4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
USP42Q9H9J4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
USP42Q9H9J4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
USP42Q9H9J4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
USP42Q9H9J4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.26■■■□□ 2.12
USP42Q9H9J4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP42Q9H9J4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP42Q9H9J4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.26■■■□□ 2.11
USP42Q9H9J4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC28.26■■■□□ 2.11
USP42Q9H9J4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
USP42Q9H9J4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP42Q9H9J4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP42Q9H9J4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
USP42Q9H9J4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
USP42Q9H9J4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.25■■■□□ 2.11
USP42Q9H9J4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USP42Q9H9J4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
USP42Q9H9J4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
USP42Q9H9J4 AC137761.2-201ENST00000561729 223 ntBASIC28.24■■■□□ 2.11
USP42Q9H9J4 AC145350.3-201ENST00000569033 163 ntBASIC28.24■■■□□ 2.11
USP42Q9H9J4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
USP42Q9H9J4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USP42Q9H9J4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.24■■■□□ 2.11
USP42Q9H9J4 AC004812.2-201ENST00000611079 2094 ntBASIC28.24■■■□□ 2.11
USP42Q9H9J4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
USP42Q9H9J4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
USP42Q9H9J4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
USP42Q9H9J4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
USP42Q9H9J4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.23■■■□□ 2.11
USP42Q9H9J4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP42Q9H9J4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.22■■■□□ 2.11
USP42Q9H9J4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC28.22■■■□□ 2.11
USP42Q9H9J4 AC016769.1-201ENST00000409132 1010 ntBASIC28.22■■■□□ 2.11
USP42Q9H9J4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.22■■■□□ 2.11
USP42Q9H9J4 GAS2L1P2-201ENST00000436355 1356 ntBASIC28.22■■■□□ 2.11
USP42Q9H9J4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP42Q9H9J4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
USP42Q9H9J4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP42Q9H9J4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
USP42Q9H9J4 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP42Q9H9J4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.22■■■□□ 2.11
USP42Q9H9J4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.21■■■□□ 2.11
USP42Q9H9J4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
USP42Q9H9J4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USP42Q9H9J4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USP42Q9H9J4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
USP42Q9H9J4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.21■■■□□ 2.11
USP42Q9H9J4 DBI-210ENST00000542275 757 ntTSL 5 BASIC28.21■■■□□ 2.11
USP42Q9H9J4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC28.21■■■□□ 2.11
USP42Q9H9J4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
USP42Q9H9J4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.2■■■□□ 2.11
USP42Q9H9J4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.2■■■□□ 2.11
USP42Q9H9J4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.2■■■□□ 2.11
USP42Q9H9J4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.2■■■□□ 2.11
USP42Q9H9J4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.11
USP42Q9H9J4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
USP42Q9H9J4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
USP42Q9H9J4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
USP42Q9H9J4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
USP42Q9H9J4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
USP42Q9H9J4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP42Q9H9J4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP42Q9H9J4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.19■■■□□ 2.1
USP42Q9H9J4 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms