Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.72■■□□□ 1.39
PAAF1Q9BRP4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.71■■□□□ 1.39
PAAF1Q9BRP4 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
PAAF1Q9BRP4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PAAF1Q9BRP4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 KRT18P5-201ENST00000436075 1291 ntBASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 AC123595.1-201ENST00000440769 1046 ntBASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PAAF1Q9BRP4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 CCDC92B-201ENST00000575506 885 ntBASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.68■■□□□ 1.38
PAAF1Q9BRP4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 AC105233.4-201ENST00000642045 216 ntBASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 ANOS2P-203ENST00000472227 1816 ntBASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.67■■□□□ 1.38
PAAF1Q9BRP4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.66■■□□□ 1.38
PAAF1Q9BRP4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 IKBKGP1-201ENST00000612193 1073 ntBASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PAAF1Q9BRP4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PAAF1Q9BRP4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PAAF1Q9BRP4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.64■■□□□ 1.38
PAAF1Q9BRP4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PAAF1Q9BRP4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PAAF1Q9BRP4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms