Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CNTNAP3BQ96NU0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 AF201337.1-201ENST00000520239 748 ntBASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CNTNAP3BQ96NU0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 AC008550.1-201ENST00000511500 884 ntBASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 AC010525.1-201ENST00000585559 441 ntBASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.16■□□□□ 0.98
CNTNAP3BQ96NU0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 AC142472.1-201ENST00000612013 1741 ntBASIC21.15■□□□□ 0.98
CNTNAP3BQ96NU0 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.14■□□□□ 0.98
CNTNAP3BQ96NU0 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CNTNAP3BQ96NU0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CNTNAP3BQ96NU0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CNTNAP3BQ96NU0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 ESRRAP1-201ENST00000400596 1257 ntBASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 AC105036.2-201ENST00000569468 176 ntBASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 REXO1L12P-201ENST00000622156 912 ntBASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CNTNAP3BQ96NU0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 LINC01023-201ENST00000606054 436 ntBASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CNTNAP3BQ96NU0 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.12■□□□□ 0.97
CNTNAP3BQ96NU0 MIR4758-201ENST00000577688 71 ntBASIC21.12■□□□□ 0.97
CNTNAP3BQ96NU0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.12■□□□□ 0.97
CNTNAP3BQ96NU0 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.11■□□□□ 0.97
CNTNAP3BQ96NU0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 AC006058.3-201ENST00000606217 1069 ntBASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CNTNAP3BQ96NU0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CNTNAP3BQ96NU0 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms