Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
RTF1Q92541 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.87■■■□□ 2.21
RTF1Q92541 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
RTF1Q92541 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
RTF1Q92541 AC012414.1-201ENST00000556676 535 ntBASIC28.87■■■□□ 2.21
RTF1Q92541 AL354811.1-201ENST00000610286 706 ntBASIC28.87■■■□□ 2.21
RTF1Q92541 ANKRD20A6P-201ENST00000618763 204 ntBASIC28.87■■■□□ 2.21
RTF1Q92541 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
RTF1Q92541 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RTF1Q92541 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
RTF1Q92541 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.86■■■□□ 2.21
RTF1Q92541 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
RTF1Q92541 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
RTF1Q92541 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
RTF1Q92541 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.85■■■□□ 2.21
RTF1Q92541 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.85■■■□□ 2.21
RTF1Q92541 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC28.85■■■□□ 2.21
RTF1Q92541 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
RTF1Q92541 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC28.85■■■□□ 2.21
RTF1Q92541 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.84■■■□□ 2.21
RTF1Q92541 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
RTF1Q92541 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.84■■■□□ 2.21
RTF1Q92541 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.84■■■□□ 2.21
RTF1Q92541 YBX1P1-201ENST00000445822 960 ntBASIC28.84■■■□□ 2.21
RTF1Q92541 MIR6084-201ENST00000622012 110 ntBASIC28.84■■■□□ 2.21
RTF1Q92541 AC068587.7-201ENST00000641602 218 ntBASIC28.84■■■□□ 2.21
RTF1Q92541 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
RTF1Q92541 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC28.83■■■□□ 2.21
RTF1Q92541 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
RTF1Q92541 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 EI24-211ENST00000534546 1544 ntTSL 2 BASIC28.83■■■□□ 2.21
RTF1Q92541 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC28.83■■■□□ 2.21
RTF1Q92541 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
RTF1Q92541 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC28.83■■■□□ 2.21
RTF1Q92541 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC28.82■■■□□ 2.2
RTF1Q92541 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
RTF1Q92541 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.82■■■□□ 2.2
RTF1Q92541 AC027612.3-201ENST00000413684 1047 ntBASIC28.82■■■□□ 2.2
RTF1Q92541 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
RTF1Q92541 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
RTF1Q92541 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC28.82■■■□□ 2.2
RTF1Q92541 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC28.81■■■□□ 2.2
RTF1Q92541 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RTF1Q92541 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC28.81■■■□□ 2.2
RTF1Q92541 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
RTF1Q92541 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.81■■■□□ 2.2
RTF1Q92541 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC28.8■■■□□ 2.2
RTF1Q92541 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.8■■■□□ 2.2
RTF1Q92541 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.8■■■□□ 2.2
RTF1Q92541 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.8■■■□□ 2.2
RTF1Q92541 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.8■■■□□ 2.2
RTF1Q92541 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.8■■■□□ 2.2
RTF1Q92541 AC105233.4-201ENST00000642045 216 ntBASIC28.8■■■□□ 2.2
RTF1Q92541 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.8■■■□□ 2.2
RTF1Q92541 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RTF1Q92541 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
RTF1Q92541 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.79■■■□□ 2.2
RTF1Q92541 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC28.79■■■□□ 2.2
RTF1Q92541 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
RTF1Q92541 AC093323.1-202ENST00000635031 2045 ntBASIC28.79■■■□□ 2.2
RTF1Q92541 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC28.78■■■□□ 2.2
RTF1Q92541 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 AL031602.1-201ENST00000633169 911 ntBASIC28.78■■■□□ 2.2
RTF1Q92541 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC28.78■■■□□ 2.2
RTF1Q92541 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RTF1Q92541 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RTF1Q92541 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
RTF1Q92541 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.77■■■□□ 2.2
RTF1Q92541 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RTF1Q92541 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.77■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms