Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL499627.2-201ENST00000606283 725 ntBASIC19.45■□□□□ 0.7
SKA3Q8IX90 pRNA.6-201ENST00000610482 90 ntBASIC19.45■□□□□ 0.7
SKA3Q8IX90 pRNA.5-201ENST00000612139 90 ntBASIC19.45■□□□□ 0.7
SKA3Q8IX90 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SKA3Q8IX90 pRNA.11-201ENST00000618423 90 ntBASIC19.45■□□□□ 0.7
SKA3Q8IX90 pRNA.13-201ENST00000619112 90 ntBASIC19.45■□□□□ 0.7
SKA3Q8IX90 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.45■□□□□ 0.7
SKA3Q8IX90 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA3Q8IX90 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SKA3Q8IX90 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.44■□□□□ 0.7
SKA3Q8IX90 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA3Q8IX90 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.44■□□□□ 0.7
SKA3Q8IX90 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA3Q8IX90 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 MIR3181-201ENST00000578512 73 ntBASIC19.43■□□□□ 0.7
SKA3Q8IX90 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SKA3Q8IX90 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SKA3Q8IX90 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 AL024507.2-201ENST00000606070 2574 ntBASIC19.42■□□□□ 0.7
SKA3Q8IX90 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 DUX4L19-201ENST00000557448 1267 ntBASIC19.42■□□□□ 0.7
SKA3Q8IX90 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SKA3Q8IX90 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.42■□□□□ 0.7
SKA3Q8IX90 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 SYT6-210ENST00000641643 1587 ntBASIC19.41■□□□□ 0.7
SKA3Q8IX90 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.41■□□□□ 0.7
SKA3Q8IX90 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SKA3Q8IX90 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 SERBP1P1-201ENST00000396021 1160 ntBASIC19.4■□□□□ 0.7
SKA3Q8IX90 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 AC004687.1-201ENST00000579003 1625 ntBASIC19.4■□□□□ 0.7
SKA3Q8IX90 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SKA3Q8IX90 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SKA3Q8IX90 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SKA3Q8IX90 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.39■□□□□ 0.69
SKA3Q8IX90 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SKA3Q8IX90 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.39■□□□□ 0.69
SKA3Q8IX90 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms