Protein–RNA interactions for Protein: P78426

NKX6-1, Homeobox protein Nkx-6.1, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1P78426 AC009086.3-201ENST00000623486 1008 ntBASIC19.32■□□□□ 0.68
NKX6-1P78426 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX6-1P78426 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX6-1P78426 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX6-1P78426 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX6-1P78426 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
NKX6-1P78426 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
NKX6-1P78426 CLDN5-201ENST00000403084 2357 ntBASIC19.31■□□□□ 0.68
NKX6-1P78426 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
NKX6-1P78426 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.31■□□□□ 0.68
NKX6-1P78426 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.31■□□□□ 0.68
NKX6-1P78426 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.31■□□□□ 0.68
NKX6-1P78426 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
NKX6-1P78426 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX6-1P78426 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
NKX6-1P78426 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NKX6-1P78426 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 AC079834.2-201ENST00000609776 1949 ntBASIC19.3■□□□□ 0.68
NKX6-1P78426 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
NKX6-1P78426 BX842568.3-201ENST00000418104 571 ntBASIC19.3■□□□□ 0.68
NKX6-1P78426 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.3■□□□□ 0.68
NKX6-1P78426 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.3■□□□□ 0.68
NKX6-1P78426 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 FP325331.1-202ENST00000623531 1380 ntBASIC19.3■□□□□ 0.68
NKX6-1P78426 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX6-1P78426 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
NKX6-1P78426 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.29■□□□□ 0.68
NKX6-1P78426 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.29■□□□□ 0.68
NKX6-1P78426 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.29■□□□□ 0.68
NKX6-1P78426 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.29■□□□□ 0.68
NKX6-1P78426 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.29■□□□□ 0.68
NKX6-1P78426 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.29■□□□□ 0.68
NKX6-1P78426 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.29■□□□□ 0.68
NKX6-1P78426 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.29■□□□□ 0.68
NKX6-1P78426 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
NKX6-1P78426 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
NKX6-1P78426 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 AC144652.1-201ENST00000609974 1624 ntBASIC19.29■□□□□ 0.68
NKX6-1P78426 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX6-1P78426 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
NKX6-1P78426 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.28■□□□□ 0.68
NKX6-1P78426 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX6-1P78426 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.28■□□□□ 0.68
NKX6-1P78426 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
NKX6-1P78426 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.28■□□□□ 0.68
NKX6-1P78426 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX6-1P78426 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 KRT18P5-201ENST00000436075 1291 ntBASIC19.27■□□□□ 0.68
NKX6-1P78426 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX6-1P78426 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 MIR3181-201ENST00000578512 73 ntBASIC19.27■□□□□ 0.68
NKX6-1P78426 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.27■□□□□ 0.68
NKX6-1P78426 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
NKX6-1P78426 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX6-1P78426 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
NKX6-1P78426 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX6-1P78426 SLC47A1P1-202ENST00000449666 945 ntBASIC19.26■□□□□ 0.67
NKX6-1P78426 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.26■□□□□ 0.67
NKX6-1P78426 DUX4L4-201ENST00000566884 1269 ntBASIC19.26■□□□□ 0.67
NKX6-1P78426 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX6-1P78426 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.26■□□□□ 0.67
NKX6-1P78426 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms