Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.99■■□□□ 1.43
TTC3P53804 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 RAP2CP1-201ENST00000605103 478 ntBASIC23.99■■□□□ 1.43
TTC3P53804 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TTC3P53804 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
TTC3P53804 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
TTC3P53804 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.98■■□□□ 1.43
TTC3P53804 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.98■■□□□ 1.43
TTC3P53804 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TTC3P53804 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TTC3P53804 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TTC3P53804 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.98■■□□□ 1.43
TTC3P53804 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TTC3P53804 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TTC3P53804 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.98■■□□□ 1.43
TTC3P53804 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.98■■□□□ 1.43
TTC3P53804 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TTC3P53804 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
TTC3P53804 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TTC3P53804 LINC02228-203ENST00000641970 1355 ntBASIC23.97■■□□□ 1.43
TTC3P53804 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.97■■□□□ 1.43
TTC3P53804 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.97■■□□□ 1.43
TTC3P53804 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TTC3P53804 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TTC3P53804 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TTC3P53804 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TTC3P53804 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TTC3P53804 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
TTC3P53804 AC006015.1-201ENST00000429970 570 ntBASIC23.96■■□□□ 1.43
TTC3P53804 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.96■■□□□ 1.43
TTC3P53804 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.96■■□□□ 1.43
TTC3P53804 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.95■■□□□ 1.42
TTC3P53804 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.95■■□□□ 1.42
TTC3P53804 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.95■■□□□ 1.42
TTC3P53804 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
TTC3P53804 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
TTC3P53804 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
TTC3P53804 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.94■■□□□ 1.42
TTC3P53804 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TTC3P53804 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.94■■□□□ 1.42
TTC3P53804 AC137761.2-201ENST00000561729 223 ntBASIC23.94■■□□□ 1.42
TTC3P53804 AC145350.3-201ENST00000569033 163 ntBASIC23.94■■□□□ 1.42
TTC3P53804 GALNS-213ENST00000569433 723 ntTSL 3 BASIC23.94■■□□□ 1.42
TTC3P53804 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
TTC3P53804 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.93■■□□□ 1.42
TTC3P53804 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.93■■□□□ 1.42
TTC3P53804 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.93■■□□□ 1.42
TTC3P53804 AP004607.4-201ENST00000530158 1459 ntBASIC23.93■■□□□ 1.42
TTC3P53804 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
TTC3P53804 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.93■■□□□ 1.42
TTC3P53804 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
TTC3P53804 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.93■■□□□ 1.42
TTC3P53804 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.93■■□□□ 1.42
TTC3P53804 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.93■■□□□ 1.42
TTC3P53804 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC3P53804 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.93■■□□□ 1.42
TTC3P53804 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 LINC00543-201ENST00000567234 1845 ntBASIC23.92■■□□□ 1.42
TTC3P53804 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
TTC3P53804 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.92■■□□□ 1.42
TTC3P53804 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
TTC3P53804 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.92■■□□□ 1.42
TTC3P53804 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC3P53804 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
TTC3P53804 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.91■■□□□ 1.42
TTC3P53804 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 AC004687.1-201ENST00000579003 1625 ntBASIC23.91■■□□□ 1.42
TTC3P53804 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.91■■□□□ 1.42
TTC3P53804 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.91■■□□□ 1.42
TTC3P53804 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.91■■□□□ 1.42
TTC3P53804 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TTC3P53804 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.91■■□□□ 1.42
TTC3P53804 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.91■■□□□ 1.42
TTC3P53804 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms