Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.69■□□□□ 0.58
PDLIM4P50479 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PDLIM4P50479 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
PDLIM4P50479 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PDLIM4P50479 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.69■□□□□ 0.58
PDLIM4P50479 AC027612.3-201ENST00000413684 1047 ntBASIC18.69■□□□□ 0.58
PDLIM4P50479 AC123595.1-201ENST00000440769 1046 ntBASIC18.69■□□□□ 0.58
PDLIM4P50479 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.69■□□□□ 0.58
PDLIM4P50479 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PDLIM4P50479 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PDLIM4P50479 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
PDLIM4P50479 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.68■□□□□ 0.58
PDLIM4P50479 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 AC010525.1-201ENST00000585559 441 ntBASIC18.68■□□□□ 0.58
PDLIM4P50479 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PDLIM4P50479 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
PDLIM4P50479 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.68■□□□□ 0.58
PDLIM4P50479 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDLIM4P50479 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM4P50479 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM4P50479 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM4P50479 AP005435.1-201ENST00000529293 1178 ntBASIC18.67■□□□□ 0.58
PDLIM4P50479 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
PDLIM4P50479 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.67■□□□□ 0.58
PDLIM4P50479 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDLIM4P50479 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PDLIM4P50479 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.66■□□□□ 0.58
PDLIM4P50479 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.66■□□□□ 0.58
PDLIM4P50479 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PDLIM4P50479 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.66■□□□□ 0.58
PDLIM4P50479 MIR6084-201ENST00000622012 110 ntBASIC18.66■□□□□ 0.58
PDLIM4P50479 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PDLIM4P50479 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDLIM4P50479 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.66■□□□□ 0.58
PDLIM4P50479 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PDLIM4P50479 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PDLIM4P50479 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM4P50479 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM4P50479 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.65■□□□□ 0.58
PDLIM4P50479 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.65■□□□□ 0.58
PDLIM4P50479 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.65■□□□□ 0.58
PDLIM4P50479 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.65■□□□□ 0.58
PDLIM4P50479 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PDLIM4P50479 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDLIM4P50479 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PDLIM4P50479 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PDLIM4P50479 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.64■□□□□ 0.57
PDLIM4P50479 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.64■□□□□ 0.57
PDLIM4P50479 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.64■□□□□ 0.57
PDLIM4P50479 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.64■□□□□ 0.57
PDLIM4P50479 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.64■□□□□ 0.57
PDLIM4P50479 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PDLIM4P50479 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.64■□□□□ 0.57
PDLIM4P50479 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.64■□□□□ 0.57
PDLIM4P50479 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.64■□□□□ 0.57
PDLIM4P50479 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.64■□□□□ 0.57
PDLIM4P50479 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PDLIM4P50479 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PDLIM4P50479 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.63■□□□□ 0.57
PDLIM4P50479 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PDLIM4P50479 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms