Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.66■■□□□ 1.22
SOX9P48436 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SOX9P48436 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SOX9P48436 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.66■■□□□ 1.22
SOX9P48436 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.66■■□□□ 1.22
SOX9P48436 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX9P48436 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.66■■□□□ 1.22
SOX9P48436 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.66■■□□□ 1.22
SOX9P48436 AC080038.1-201ENST00000611274 1154 ntBASIC22.66■■□□□ 1.22
SOX9P48436 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.66■■□□□ 1.22
SOX9P48436 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX9P48436 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.65■■□□□ 1.22
SOX9P48436 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.65■■□□□ 1.22
SOX9P48436 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX9P48436 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.65■■□□□ 1.22
SOX9P48436 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX9P48436 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.65■■□□□ 1.22
SOX9P48436 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX9P48436 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
SOX9P48436 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.65■■□□□ 1.22
SOX9P48436 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX9P48436 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX9P48436 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
SOX9P48436 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SOX9P48436 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SOX9P48436 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.64■■□□□ 1.21
SOX9P48436 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.64■■□□□ 1.21
SOX9P48436 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.64■■□□□ 1.21
SOX9P48436 TPRG1LP1-201ENST00000598702 760 ntBASIC22.64■■□□□ 1.21
SOX9P48436 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
SOX9P48436 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22.64■■□□□ 1.21
SOX9P48436 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX9P48436 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SOX9P48436 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX9P48436 AC004687.1-201ENST00000579003 1625 ntBASIC22.64■■□□□ 1.21
SOX9P48436 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX9P48436 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.63■■□□□ 1.21
SOX9P48436 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
SOX9P48436 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.63■■□□□ 1.21
SOX9P48436 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.63■■□□□ 1.21
SOX9P48436 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX9P48436 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
SOX9P48436 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX9P48436 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.63■■□□□ 1.21
SOX9P48436 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX9P48436 AC137761.2-201ENST00000561729 223 ntBASIC22.63■■□□□ 1.21
SOX9P48436 AC145350.3-201ENST00000569033 163 ntBASIC22.63■■□□□ 1.21
SOX9P48436 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.63■■□□□ 1.21
SOX9P48436 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
SOX9P48436 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
SOX9P48436 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.62■■□□□ 1.21
SOX9P48436 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
SOX9P48436 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 AC006015.1-201ENST00000429970 570 ntBASIC22.62■■□□□ 1.21
SOX9P48436 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX9P48436 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
SOX9P48436 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX9P48436 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX9P48436 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX9P48436 AC016769.1-201ENST00000409132 1010 ntBASIC22.61■■□□□ 1.21
SOX9P48436 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.61■■□□□ 1.21
SOX9P48436 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.61■■□□□ 1.21
SOX9P48436 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.61■■□□□ 1.21
SOX9P48436 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
SOX9P48436 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.61■■□□□ 1.21
SOX9P48436 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
SOX9P48436 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.61■■□□□ 1.21
SOX9P48436 AC004854.2-201ENST00000608450 1441 ntBASIC22.6■■□□□ 1.21
SOX9P48436 AC079630.1-202ENST00000618127 1840 ntBASIC22.6■■□□□ 1.21
SOX9P48436 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.6■■□□□ 1.21
SOX9P48436 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.6■■□□□ 1.21
SOX9P48436 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.6■■□□□ 1.21
SOX9P48436 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SOX9P48436 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX9P48436 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
SOX9P48436 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
SOX9P48436 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
SOX9P48436 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.59■■□□□ 1.21
SOX9P48436 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.59■■□□□ 1.21
SOX9P48436 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.59■■□□□ 1.21
SOX9P48436 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
SOX9P48436 AP004607.4-201ENST00000530158 1459 ntBASIC22.59■■□□□ 1.21
SOX9P48436 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SOX9P48436 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.58■■□□□ 1.21
SOX9P48436 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
SOX9P48436 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms