Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
SCN4AP35499 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.64■■□□□ 1.85
SCN4AP35499 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
SCN4AP35499 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SCN4AP35499 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SCN4AP35499 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SCN4AP35499 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
SCN4AP35499 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SCN4AP35499 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SCN4AP35499 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
SCN4AP35499 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SCN4AP35499 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SCN4AP35499 POU5F1P3-201ENST00000428824 1078 ntBASIC26.62■■□□□ 1.85
SCN4AP35499 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
SCN4AP35499 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SCN4AP35499 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.61■■□□□ 1.85
SCN4AP35499 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC26.61■■□□□ 1.85
SCN4AP35499 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SCN4AP35499 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SCN4AP35499 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
SCN4AP35499 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.61■■□□□ 1.85
SCN4AP35499 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SCN4AP35499 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SCN4AP35499 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC26.6■■□□□ 1.85
SCN4AP35499 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC26.6■■□□□ 1.85
SCN4AP35499 AC005181.1-201ENST00000604782 1256 ntBASIC26.6■■□□□ 1.85
SCN4AP35499 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SCN4AP35499 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.59■■□□□ 1.85
SCN4AP35499 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.59■■□□□ 1.85
SCN4AP35499 ARL16-209ENST00000573715 763 ntTSL 3 BASIC26.59■■□□□ 1.85
SCN4AP35499 ARL16-211ENST00000576135 694 ntTSL 3 BASIC26.59■■□□□ 1.85
SCN4AP35499 UBE2DNL-204ENST00000602536 740 ntBASIC26.59■■□□□ 1.85
SCN4AP35499 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
SCN4AP35499 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SCN4AP35499 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.58■■□□□ 1.85
SCN4AP35499 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SCN4AP35499 AC007322.1-201ENST00000426983 750 ntBASIC26.58■■□□□ 1.85
SCN4AP35499 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.58■■□□□ 1.85
SCN4AP35499 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC26.58■■□□□ 1.85
SCN4AP35499 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SCN4AP35499 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SCN4AP35499 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
SCN4AP35499 AC079140.4-201ENST00000507448 529 ntBASIC26.58■■□□□ 1.84
SCN4AP35499 AC144652.1-201ENST00000609974 1624 ntBASIC26.57■■□□□ 1.84
SCN4AP35499 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SCN4AP35499 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.57■■□□□ 1.84
SCN4AP35499 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.57■■□□□ 1.84
SCN4AP35499 AF201337.1-201ENST00000520239 748 ntBASIC26.57■■□□□ 1.84
SCN4AP35499 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SCN4AP35499 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.56■■□□□ 1.84
SCN4AP35499 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SCN4AP35499 SMUG1P1-201ENST00000590640 811 ntBASIC26.56■■□□□ 1.84
SCN4AP35499 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.56■■□□□ 1.84
SCN4AP35499 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
SCN4AP35499 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
SCN4AP35499 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.56■■□□□ 1.84
SCN4AP35499 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
SCN4AP35499 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
SCN4AP35499 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
SCN4AP35499 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN4AP35499 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.55■■□□□ 1.84
SCN4AP35499 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN4AP35499 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN4AP35499 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN4AP35499 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC26.55■■□□□ 1.84
SCN4AP35499 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.55■■□□□ 1.84
SCN4AP35499 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
SCN4AP35499 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
SCN4AP35499 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.55■■□□□ 1.84
SCN4AP35499 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
SCN4AP35499 AC104187.1-201ENST00000607510 612 ntBASIC26.55■■□□□ 1.84
SCN4AP35499 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC26.55■■□□□ 1.84
SCN4AP35499 AC133041.1-202ENST00000642053 222 ntBASIC26.55■■□□□ 1.84
SCN4AP35499 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN4AP35499 HLA-L-211ENST00000482052 1765 ntBASIC26.55■■□□□ 1.84
SCN4AP35499 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
SCN4AP35499 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.54■■□□□ 1.84
SCN4AP35499 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.54■■□□□ 1.84
SCN4AP35499 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
SCN4AP35499 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
SCN4AP35499 CNN2P6-201ENST00000439038 900 ntBASIC26.54■■□□□ 1.84
SCN4AP35499 RPS2P52-201ENST00000469610 820 ntBASIC26.54■■□□□ 1.84
SCN4AP35499 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC26.54■■□□□ 1.84
SCN4AP35499 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
SCN4AP35499 AC068587.7-201ENST00000641602 218 ntBASIC26.54■■□□□ 1.84
SCN4AP35499 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.54■■□□□ 1.84
SCN4AP35499 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.54■■□□□ 1.84
SCN4AP35499 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SCN4AP35499 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SCN4AP35499 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.53■■□□□ 1.84
SCN4AP35499 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SCN4AP35499 KRT87P-202ENST00000534226 1464 ntBASIC26.53■■□□□ 1.84
SCN4AP35499 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC26.53■■□□□ 1.84
SCN4AP35499 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms