Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DUX4L5-201ENST00000630834 1275 ntBASIC18.62■□□□□ 0.57
USF1P22415 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.62■□□□□ 0.57
USF1P22415 RARRES2P11-201ENST00000635158 484 ntBASIC18.62■□□□□ 0.57
USF1P22415 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
USF1P22415 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
USF1P22415 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.62■□□□□ 0.57
USF1P22415 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
USF1P22415 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USF1P22415 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 FP325331.1-202ENST00000623531 1380 ntBASIC18.61■□□□□ 0.57
USF1P22415 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
USF1P22415 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.61■□□□□ 0.57
USF1P22415 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USF1P22415 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.61■□□□□ 0.57
USF1P22415 IKBKGP1-201ENST00000612193 1073 ntBASIC18.61■□□□□ 0.57
USF1P22415 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 MIR6084-201ENST00000622012 110 ntBASIC18.61■□□□□ 0.57
USF1P22415 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.61■□□□□ 0.57
USF1P22415 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.61■□□□□ 0.57
USF1P22415 AC004812.2-201ENST00000611079 2094 ntBASIC18.61■□□□□ 0.57
USF1P22415 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USF1P22415 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
USF1P22415 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.6■□□□□ 0.57
USF1P22415 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
USF1P22415 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.6■□□□□ 0.57
USF1P22415 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.6■□□□□ 0.57
USF1P22415 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
USF1P22415 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 AC090192.1-201ENST00000517740 490 ntBASIC18.6■□□□□ 0.57
USF1P22415 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.6■□□□□ 0.57
USF1P22415 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USF1P22415 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.6■□□□□ 0.57
USF1P22415 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.6■□□□□ 0.57
USF1P22415 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.59■□□□□ 0.57
USF1P22415 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
USF1P22415 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
USF1P22415 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USF1P22415 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.59■□□□□ 0.57
USF1P22415 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
USF1P22415 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.59■□□□□ 0.57
USF1P22415 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USF1P22415 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
USF1P22415 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
USF1P22415 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USF1P22415 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.58■□□□□ 0.56
USF1P22415 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
USF1P22415 OR2I1P-207ENST00000453522 948 ntBASIC18.58■□□□□ 0.56
USF1P22415 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.58■□□□□ 0.56
USF1P22415 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.58■□□□□ 0.56
USF1P22415 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USF1P22415 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USF1P22415 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USF1P22415 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
USF1P22415 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USF1P22415 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.58■□□□□ 0.56
USF1P22415 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USF1P22415 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms