Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
NPHP4O75161 ITM2C-210ENST00000620962 501 ntBASIC31.7■■■□□ 2.67
NPHP4O75161 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP4O75161 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
NPHP4O75161 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC31.69■■■□□ 2.66
NPHP4O75161 HLA-L-211ENST00000482052 1765 ntBASIC31.69■■■□□ 2.66
NPHP4O75161 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP4O75161 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP4O75161 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
NPHP4O75161 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC31.68■■■□□ 2.66
NPHP4O75161 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 POU5F1P3-201ENST00000428824 1078 ntBASIC31.68■■■□□ 2.66
NPHP4O75161 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC31.68■■■□□ 2.66
NPHP4O75161 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC31.68■■■□□ 2.66
NPHP4O75161 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP4O75161 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP4O75161 AC073210.2-201ENST00000430369 194 ntBASIC31.67■■■□□ 2.66
NPHP4O75161 AC079140.4-201ENST00000507448 529 ntBASIC31.67■■■□□ 2.66
NPHP4O75161 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC31.67■■■□□ 2.66
NPHP4O75161 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.67■■■□□ 2.66
NPHP4O75161 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP4O75161 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
NPHP4O75161 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
NPHP4O75161 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
NPHP4O75161 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 AC007322.1-201ENST00000426983 750 ntBASIC31.66■■■□□ 2.66
NPHP4O75161 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC31.66■■■□□ 2.66
NPHP4O75161 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC31.66■■■□□ 2.66
NPHP4O75161 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC31.66■■■□□ 2.66
NPHP4O75161 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC31.66■■■□□ 2.66
NPHP4O75161 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC31.66■■■□□ 2.66
NPHP4O75161 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC31.66■■■□□ 2.66
NPHP4O75161 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP4O75161 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC31.65■■■□□ 2.66
NPHP4O75161 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP4O75161 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
NPHP4O75161 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
NPHP4O75161 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC31.64■■■□□ 2.66
NPHP4O75161 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
NPHP4O75161 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC31.64■■■□□ 2.66
NPHP4O75161 SMUG1P1-201ENST00000590640 811 ntBASIC31.64■■■□□ 2.66
NPHP4O75161 AC133041.1-202ENST00000642053 222 ntBASIC31.64■■■□□ 2.66
NPHP4O75161 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP4O75161 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP4O75161 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
NPHP4O75161 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP4O75161 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
NPHP4O75161 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP4O75161 PRORSD1P-201ENST00000295112 541 ntBASIC31.62■■■□□ 2.65
NPHP4O75161 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC31.62■■■□□ 2.65
NPHP4O75161 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC31.62■■■□□ 2.65
NPHP4O75161 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC31.62■■■□□ 2.65
NPHP4O75161 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NPHP4O75161 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.62■■■□□ 2.65
NPHP4O75161 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC31.62■■■□□ 2.65
NPHP4O75161 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP4O75161 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC31.61■■■□□ 2.65
NPHP4O75161 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP4O75161 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.61■■■□□ 2.65
NPHP4O75161 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP4O75161 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
NPHP4O75161 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC31.6■■■□□ 2.65
NPHP4O75161 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NPHP4O75161 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC31.6■■■□□ 2.65
NPHP4O75161 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
NPHP4O75161 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP4O75161 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP4O75161 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP4O75161 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC31.58■■■□□ 2.65
NPHP4O75161 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 UBE2DNL-204ENST00000602536 740 ntBASIC31.58■■■□□ 2.65
NPHP4O75161 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP4O75161 RPS2P52-201ENST00000469610 820 ntBASIC31.58■■■□□ 2.65
NPHP4O75161 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC31.58■■■□□ 2.65
NPHP4O75161 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.57■■■□□ 2.65
NPHP4O75161 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP4O75161 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP4O75161 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC31.57■■■□□ 2.64
NPHP4O75161 SHF-207ENST00000560540 2062 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP4O75161 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP4O75161 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP4O75161 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC31.57■■■□□ 2.64
NPHP4O75161 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP4O75161 KRT18P29-201ENST00000397031 1267 ntBASIC31.56■■■□□ 2.64
NPHP4O75161 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC31.56■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms