Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.88■□□□□ 0.61
XRCC3O43542 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
XRCC3O43542 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
XRCC3O43542 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.88■□□□□ 0.61
XRCC3O43542 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
XRCC3O43542 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
XRCC3O43542 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
XRCC3O43542 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.87■□□□□ 0.61
XRCC3O43542 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
XRCC3O43542 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
XRCC3O43542 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
XRCC3O43542 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
XRCC3O43542 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 DUX4L9-201ENST00000449051 1259 ntBASIC18.86■□□□□ 0.61
XRCC3O43542 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
XRCC3O43542 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
XRCC3O43542 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
XRCC3O43542 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
XRCC3O43542 AC144652.1-201ENST00000609974 1624 ntBASIC18.85■□□□□ 0.61
XRCC3O43542 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.85■□□□□ 0.61
XRCC3O43542 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
XRCC3O43542 AC022616.5-201ENST00000518796 181 ntBASIC18.85■□□□□ 0.61
XRCC3O43542 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
XRCC3O43542 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC3O43542 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
XRCC3O43542 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC3O43542 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC3O43542 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
XRCC3O43542 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC3O43542 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.85■□□□□ 0.61
XRCC3O43542 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC3O43542 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
XRCC3O43542 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
XRCC3O43542 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC18.84■□□□□ 0.61
XRCC3O43542 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
XRCC3O43542 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
XRCC3O43542 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC3O43542 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC18.84■□□□□ 0.61
XRCC3O43542 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
XRCC3O43542 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.84■□□□□ 0.61
XRCC3O43542 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC3O43542 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
XRCC3O43542 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.83■□□□□ 0.61
XRCC3O43542 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC3O43542 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.83■□□□□ 0.61
XRCC3O43542 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
XRCC3O43542 AC004448.1-201ENST00000458332 883 ntBASIC18.83■□□□□ 0.6
XRCC3O43542 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.83■□□□□ 0.6
XRCC3O43542 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC3O43542 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC3O43542 AC005229.4-201ENST00000610085 2198 ntBASIC18.83■□□□□ 0.6
XRCC3O43542 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC3O43542 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC3O43542 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC3O43542 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.82■□□□□ 0.6
XRCC3O43542 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.82■□□□□ 0.6
XRCC3O43542 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.82■□□□□ 0.6
XRCC3O43542 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.82■□□□□ 0.6
XRCC3O43542 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
XRCC3O43542 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC3O43542 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
XRCC3O43542 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms