Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PROM1O43490 C1orf229-201ENST00000623686 2258 ntBASIC20.92■□□□□ 0.94
PROM1O43490 AL136116.3-201ENST00000402907 1138 ntBASIC20.92■□□□□ 0.94
PROM1O43490 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
PROM1O43490 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PROM1O43490 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PROM1O43490 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.92■□□□□ 0.94
PROM1O43490 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.92■□□□□ 0.94
PROM1O43490 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PROM1O43490 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PROM1O43490 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.91■□□□□ 0.94
PROM1O43490 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PROM1O43490 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PROM1O43490 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PROM1O43490 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.91■□□□□ 0.94
PROM1O43490 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.91■□□□□ 0.94
PROM1O43490 pRNA.6-201ENST00000610482 90 ntBASIC20.91■□□□□ 0.94
PROM1O43490 pRNA.5-201ENST00000612139 90 ntBASIC20.91■□□□□ 0.94
PROM1O43490 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.91■□□□□ 0.94
PROM1O43490 pRNA.11-201ENST00000618423 90 ntBASIC20.91■□□□□ 0.94
PROM1O43490 pRNA.13-201ENST00000619112 90 ntBASIC20.91■□□□□ 0.94
PROM1O43490 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PROM1O43490 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
PROM1O43490 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.9■□□□□ 0.94
PROM1O43490 MIR3181-201ENST00000578512 73 ntBASIC20.9■□□□□ 0.94
PROM1O43490 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PROM1O43490 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.9■□□□□ 0.94
PROM1O43490 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.9■□□□□ 0.94
PROM1O43490 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PROM1O43490 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PROM1O43490 AC004687.1-201ENST00000579003 1625 ntBASIC20.89■□□□□ 0.94
PROM1O43490 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.89■□□□□ 0.94
PROM1O43490 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
PROM1O43490 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PROM1O43490 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.89■□□□□ 0.93
PROM1O43490 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PROM1O43490 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.89■□□□□ 0.93
PROM1O43490 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PROM1O43490 DUX4L19-201ENST00000557448 1267 ntBASIC20.89■□□□□ 0.93
PROM1O43490 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.89■□□□□ 0.93
PROM1O43490 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PROM1O43490 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PROM1O43490 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
PROM1O43490 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PROM1O43490 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PROM1O43490 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.88■□□□□ 0.93
PROM1O43490 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.88■□□□□ 0.93
PROM1O43490 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.88■□□□□ 0.93
PROM1O43490 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PROM1O43490 AC133637.1-201ENST00000624115 1537 ntBASIC20.88■□□□□ 0.93
PROM1O43490 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
PROM1O43490 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.87■□□□□ 0.93
PROM1O43490 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PROM1O43490 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PROM1O43490 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
PROM1O43490 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PROM1O43490 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PROM1O43490 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PROM1O43490 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.86■□□□□ 0.93
PROM1O43490 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PROM1O43490 SYT6-210ENST00000641643 1587 ntBASIC20.86■□□□□ 0.93
PROM1O43490 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.86■□□□□ 0.93
PROM1O43490 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.86■□□□□ 0.93
PROM1O43490 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PROM1O43490 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PROM1O43490 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.86■□□□□ 0.93
PROM1O43490 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PROM1O43490 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PROM1O43490 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PROM1O43490 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
PROM1O43490 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PROM1O43490 SERBP1P1-201ENST00000396021 1160 ntBASIC20.85■□□□□ 0.93
PROM1O43490 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PROM1O43490 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.85■□□□□ 0.93
PROM1O43490 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.85■□□□□ 0.93
PROM1O43490 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
PROM1O43490 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
PROM1O43490 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PROM1O43490 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms