Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
MSH5O43196 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.45■■■□□ 2.31
MSH5O43196 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.3
MSH5O43196 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.3
MSH5O43196 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH5O43196 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH5O43196 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC29.44■■■□□ 2.3
MSH5O43196 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH5O43196 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.44■■■□□ 2.3
MSH5O43196 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC29.44■■■□□ 2.3
MSH5O43196 AC092437.1-201ENST00000624794 1048 ntBASIC29.44■■■□□ 2.3
MSH5O43196 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
MSH5O43196 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
MSH5O43196 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
MSH5O43196 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
MSH5O43196 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
MSH5O43196 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.43■■■□□ 2.3
MSH5O43196 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.43■■■□□ 2.3
MSH5O43196 AC233992.3-201ENST00000607491 485 ntBASIC29.43■■■□□ 2.3
MSH5O43196 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC29.43■■■□□ 2.3
MSH5O43196 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
MSH5O43196 C1orf229-201ENST00000623686 2258 ntBASIC29.42■■■□□ 2.3
MSH5O43196 ABCB10P4-201ENST00000566803 2184 ntBASIC29.42■■■□□ 2.3
MSH5O43196 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
MSH5O43196 ID1-201ENST00000376105 1233 ntBASIC29.42■■■□□ 2.3
MSH5O43196 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC29.42■■■□□ 2.3
MSH5O43196 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.42■■■□□ 2.3
MSH5O43196 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC29.42■■■□□ 2.3
MSH5O43196 AL031602.1-201ENST00000633169 911 ntBASIC29.42■■■□□ 2.3
MSH5O43196 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH5O43196 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
MSH5O43196 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.41■■■□□ 2.3
MSH5O43196 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.41■■■□□ 2.3
MSH5O43196 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
MSH5O43196 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH5O43196 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC29.4■■■□□ 2.3
MSH5O43196 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
MSH5O43196 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
MSH5O43196 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.4■■■□□ 2.3
MSH5O43196 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
MSH5O43196 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
MSH5O43196 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
MSH5O43196 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.4■■■□□ 2.3
MSH5O43196 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
MSH5O43196 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
MSH5O43196 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
MSH5O43196 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.39■■■□□ 2.3
MSH5O43196 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.39■■■□□ 2.3
MSH5O43196 AC136469.2-201ENST00000623944 1028 ntBASIC29.39■■■□□ 2.3
MSH5O43196 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
MSH5O43196 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
MSH5O43196 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC29.38■■■□□ 2.29
MSH5O43196 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
MSH5O43196 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH5O43196 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.38■■■□□ 2.29
MSH5O43196 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC29.38■■■□□ 2.29
MSH5O43196 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
MSH5O43196 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH5O43196 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
MSH5O43196 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
MSH5O43196 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
MSH5O43196 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH5O43196 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH5O43196 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
MSH5O43196 DLX3-202ENST00000512495 834 ntTSL 2 BASIC29.37■■■□□ 2.29
MSH5O43196 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC29.37■■■□□ 2.29
MSH5O43196 AC005972.3-201ENST00000606304 481 ntBASIC29.37■■■□□ 2.29
MSH5O43196 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.37■■■□□ 2.29
MSH5O43196 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
MSH5O43196 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
MSH5O43196 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 AC007375.3-201ENST00000600936 2314 ntBASIC29.36■■■□□ 2.29
MSH5O43196 MED17-221ENST00000639724 2317 ntTSL 5 BASIC29.36■■■□□ 2.29
MSH5O43196 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC29.36■■■□□ 2.29
MSH5O43196 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC29.36■■■□□ 2.29
MSH5O43196 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
MSH5O43196 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
MSH5O43196 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
MSH5O43196 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 AC009102.2-201ENST00000606772 1639 ntBASIC29.35■■■□□ 2.29
MSH5O43196 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 YBX1P1-201ENST00000445822 960 ntBASIC29.35■■■□□ 2.29
MSH5O43196 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC29.35■■■□□ 2.29
MSH5O43196 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC29.35■■■□□ 2.29
MSH5O43196 AL158211.2-201ENST00000607282 395 ntBASIC29.35■■■□□ 2.29
MSH5O43196 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
MSH5O43196 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC29.35■■■□□ 2.29
MSH5O43196 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.35■■■□□ 2.29
MSH5O43196 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC29.35■■■□□ 2.29
MSH5O43196 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
MSH5O43196 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC29.34■■■□□ 2.29
MSH5O43196 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms