Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC38.89■■■■□ 3.82
CCDC88BA6NC98 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC38.88■■■■□ 3.82
CCDC88BA6NC98 EMC9-206ENST00000560403 872 ntTSL 2 BASIC38.88■■■■□ 3.81
CCDC88BA6NC98 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
CCDC88BA6NC98 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC38.88■■■■□ 3.81
CCDC88BA6NC98 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
CCDC88BA6NC98 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
CCDC88BA6NC98 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
CCDC88BA6NC98 GAS2L1P2-201ENST00000436355 1356 ntBASIC38.87■■■■□ 3.81
CCDC88BA6NC98 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC38.86■■■■□ 3.81
CCDC88BA6NC98 GXYLT1P5-201ENST00000614548 1189 ntBASIC38.86■■■■□ 3.81
CCDC88BA6NC98 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC38.85■■■■□ 3.81
CCDC88BA6NC98 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC38.85■■■■□ 3.81
CCDC88BA6NC98 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CCDC88BA6NC98 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC38.85■■■■□ 3.81
CCDC88BA6NC98 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
CCDC88BA6NC98 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC38.84■■■■□ 3.81
CCDC88BA6NC98 COX20-201ENST00000366528 568 ntTSL 2 BASIC38.84■■■■□ 3.81
CCDC88BA6NC98 AC016769.1-201ENST00000409132 1010 ntBASIC38.84■■■■□ 3.81
CCDC88BA6NC98 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
CCDC88BA6NC98 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
CCDC88BA6NC98 EED-207ENST00000528180 1745 ntTSL 5 BASIC38.83■■■■□ 3.81
CCDC88BA6NC98 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC38.83■■■■□ 3.81
CCDC88BA6NC98 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
CCDC88BA6NC98 AC104771.1-201ENST00000603335 964 ntBASIC38.83■■■■□ 3.81
CCDC88BA6NC98 AC079630.1-202ENST00000618127 1840 ntBASIC38.82■■■■□ 3.81
CCDC88BA6NC98 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
CCDC88BA6NC98 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
CCDC88BA6NC98 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
CCDC88BA6NC98 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC38.82■■■■□ 3.81
CCDC88BA6NC98 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.8
CCDC88BA6NC98 CROCCP5-201ENST00000436658 830 ntBASIC38.81■■■■□ 3.8
CCDC88BA6NC98 SMUG1P1-201ENST00000590640 811 ntBASIC38.81■■■■□ 3.8
CCDC88BA6NC98 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC38.81■■■■□ 3.8
CCDC88BA6NC98 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
CCDC88BA6NC98 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
CCDC88BA6NC98 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC38.79■■■■□ 3.8
CCDC88BA6NC98 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CCDC88BA6NC98 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC38.79■■■■□ 3.8
CCDC88BA6NC98 BX005040.4-201ENST00000637145 1518 ntBASIC38.79■■■■□ 3.8
CCDC88BA6NC98 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC38.79■■■■□ 3.8
CCDC88BA6NC98 MAP2K4P1-201ENST00000438453 1195 ntBASIC38.79■■■■□ 3.8
CCDC88BA6NC98 PPP1R14BP3-201ENST00000509033 445 ntBASIC38.79■■■■□ 3.8
CCDC88BA6NC98 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 AC004687.1-201ENST00000579003 1625 ntBASIC38.78■■■■□ 3.8
CCDC88BA6NC98 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC38.78■■■■□ 3.8
CCDC88BA6NC98 EI24-211ENST00000534546 1544 ntTSL 2 BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 AC026185.1-201ENST00000445748 174 ntBASIC38.77■■■■□ 3.8
CCDC88BA6NC98 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
CCDC88BA6NC98 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
CCDC88BA6NC98 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
CCDC88BA6NC98 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
CCDC88BA6NC98 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC38.73■■■■□ 3.79
CCDC88BA6NC98 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CCDC88BA6NC98 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC38.73■■■■□ 3.79
CCDC88BA6NC98 BID-214ENST00000617586 542 ntTSL 5 BASIC38.73■■■■□ 3.79
CCDC88BA6NC98 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms