Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SMIM28A0A1B0GU29 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 AC087623.3-201ENST00000607047 1098 ntBASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 MIR5787-201ENST00000611784 55 ntBASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SMIM28A0A1B0GU29 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 AL358852.1-201ENST00000623174 1268 ntBASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.78■■□□□ 1.4
SMIM28A0A1B0GU29 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMIM28A0A1B0GU29 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMIM28A0A1B0GU29 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMIM28A0A1B0GU29 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
SMIM28A0A1B0GU29 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMIM28A0A1B0GU29 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 AC012414.1-201ENST00000556676 535 ntBASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 AL031602.1-201ENST00000633169 911 ntBASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMIM28A0A1B0GU29 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 AL354811.1-201ENST00000610286 706 ntBASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 MIR6084-201ENST00000622012 110 ntBASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 AC068587.7-201ENST00000641602 218 ntBASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SMIM28A0A1B0GU29 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMIM28A0A1B0GU29 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 AC027612.3-201ENST00000413684 1047 ntBASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
SMIM28A0A1B0GU29 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms