Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC004899.2-201ENST00000622993 3860 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC010086.2-201ENST00000428616 226 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC074019.1-201ENST00000428788 1096 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 RN7SL794P-201ENST00000469816 280 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AL031673.1-201ENST00000611460 466 ntBASIC12.87□□□□□ -0.35
COL28A1Q2UY09 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 EML1-203ENST00000334192 4064 ntTSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.87□□□□□ -0.35
COL28A1Q2UY09 AC072061.1-201ENST00000569710 2234 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 KRT8P43-201ENST00000406052 1458 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 POP5-201ENST00000341039 913 ntTSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 U3.5-201ENST00000363448 216 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 DNM1P48-201ENST00000419538 439 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 IGHVII-74-1-201ENST00000517572 241 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CETN3-205ENST00000522842 664 ntTSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 FAM187B2P-201ENST00000577135 713 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 KRT18P8-201ENST00000581937 1246 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AC139100.2-201ENST00000616901 662 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CR392039.2-201ENST00000623182 509 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AP001972.5-201ENST00000624624 2338 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 GOLGA8UP-201ENST00000527159 1755 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 AC106818.1-201ENST00000623223 3242 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.86□□□□□ -0.35
COL28A1Q2UY09 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL28A1Q2UY09 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms