Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
RFC3P40938 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC12.26□□□□□ -0.45
RFC3P40938 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC12.26□□□□□ -0.45
RFC3P40938 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.26□□□□□ -0.45
RFC3P40938 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 PCDHA6-201ENST00000378126 3267 ntBASIC12.26□□□□□ -0.45
RFC3P40938 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC12.26□□□□□ -0.45
RFC3P40938 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.26□□□□□ -0.45
RFC3P40938 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RFC3P40938 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC12.25□□□□□ -0.45
RFC3P40938 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 AP000437.1-201ENST00000624057 2085 ntBASIC12.25□□□□□ -0.45
RFC3P40938 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.25□□□□□ -0.45
RFC3P40938 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
RFC3P40938 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 CCL19-202ENST00000378800 414 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 SERF2-204ENST00000402131 586 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 AC136604.1-202ENST00000425471 771 ntBASIC12.25□□□□□ -0.45
RFC3P40938 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 FAU-202ENST00000434372 533 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 CDCA4P4-201ENST00000435216 680 ntBASIC12.25□□□□□ -0.45
RFC3P40938 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 NDUFB2P1-201ENST00000506966 295 ntBASIC12.25□□□□□ -0.45
RFC3P40938 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC12.25□□□□□ -0.45
RFC3P40938 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 NAA38-204ENST00000575208 529 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC12.25□□□□□ -0.45
RFC3P40938 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC12.25□□□□□ -0.45
RFC3P40938 Z82244.1-201ENST00000631502 840 ntBASIC12.25□□□□□ -0.45
RFC3P40938 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
RFC3P40938 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 GBAP1-208ENST00000566701 1546 ntBASIC12.25□□□□□ -0.45
RFC3P40938 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 ABCD1P2-201ENST00000429313 1601 ntBASIC12.25□□□□□ -0.45
RFC3P40938 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RFC3P40938 LPO-204ENST00000543544 2350 ntTSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
RFC3P40938 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC12.25□□□□□ -0.45
RFC3P40938 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.24□□□□□ -0.45
RFC3P40938 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC12.24□□□□□ -0.45
RFC3P40938 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC12.24□□□□□ -0.45
RFC3P40938 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
RFC3P40938 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC12.24□□□□□ -0.45
RFC3P40938 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
RFC3P40938 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC12.24□□□□□ -0.45
RFC3P40938 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RFC3P40938 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms