Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 CICP20-201ENST00000443330 2801 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 TACC1-208ENST00000520340 1976 ntTSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 PRKAG1-201ENST00000316299 1683 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC15.12■□□□□ 0.01
SMARCA1P28370 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC010182.1-201ENST00000548943 2434 ntBASIC15.12■□□□□ 0.01
SMARCA1P28370 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC15.12■□□□□ 0.01
SMARCA1P28370 PRIMPOL-201ENST00000314970 2289 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 MICA-210ENST00000616296 2260 ntTSL 5 BASIC15.12■□□□□ 0.01
SMARCA1P28370 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC15.12■□□□□ 0.01
SMARCA1P28370 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 AL049597.1-201ENST00000447415 555 ntBASIC15.12■□□□□ 0.01
SMARCA1P28370 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC15.12■□□□□ 0.01
SMARCA1P28370 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.12■□□□□ 0.01
SMARCA1P28370 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC093700.1-201ENST00000503348 717 ntBASIC15.12■□□□□ 0.01
SMARCA1P28370 AC113391.1-201ENST00000507236 578 ntTSL 4 BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 IGHEP2-201ENST00000519308 1256 ntBASIC15.12■□□□□ 0.01
SMARCA1P28370 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC15.12■□□□□ 0.01
SMARCA1P28370 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 AC009061.2-202ENST00000602596 696 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 FHL2-208ENST00000409807 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 ELOVL1-216ENST00000621943 1625 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 USP3-204ENST00000540797 5474 ntTSL 2 BASIC15.12■□□□□ 0.01
SMARCA1P28370 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
SMARCA1P28370 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC15.12■□□□□ 0.01
SMARCA1P28370 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMARCA1P28370 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 NUTM2HP-201ENST00000442076 2498 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 UGT1A1-201ENST00000305208 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 OR2T33-201ENST00000318021 1066 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
SMARCA1P28370 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC15.11■□□□□ 0.01
SMARCA1P28370 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC15.11■□□□□ 0.01
SMARCA1P28370 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 AL137244.1-201ENST00000422931 865 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 PSME2P2-201ENST00000453033 700 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 AC010234.1-201ENST00000494599 870 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 HNRNPA1P55-201ENST00000505935 955 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 AP001360.1-203ENST00000524708 464 ntTSL 3 BASIC15.11■□□□□ 0.01
SMARCA1P28370 AL139353.1-202ENST00000547378 474 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SMARCA1P28370 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SMARCA1P28370 AC104440.1-201ENST00000605010 343 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 AC009118.3-201ENST00000622896 873 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SMARCA1P28370 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC15.11■□□□□ 0.01
SMARCA1P28370 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.11■□□□□ 0.01
SMARCA1P28370 CASC4P1-201ENST00000456608 1312 ntBASIC15.11■□□□□ 0.01
SMARCA1P28370 EFHC1-224ENST00000636702 2197 ntTSL 5 BASIC15.11■□□□□ 0.01
SMARCA1P28370 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms