Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC15.18■□□□□ 0.02
SMARCA1P28370 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC15.18■□□□□ 0.02
SMARCA1P28370 AL445209.1-201ENST00000607269 3491 ntBASIC15.18■□□□□ 0.02
SMARCA1P28370 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 SYT17-204ENST00000562711 1702 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 NXPE4-201ENST00000375478 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SMARCA1P28370 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 LCE2D-201ENST00000368784 609 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 COQ4-202ENST00000372875 928 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 MIR632-201ENST00000385193 94 ntBASIC15.18■□□□□ 0.02
SMARCA1P28370 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC15.18■□□□□ 0.02
SMARCA1P28370 LAMTOR5-203ENST00000474861 1154 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
SMARCA1P28370 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.18■□□□□ 0.02
SMARCA1P28370 LINC02340-202ENST00000620494 573 ntTSL 4 BASIC15.18■□□□□ 0.02
SMARCA1P28370 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 YAP1P1-201ENST00000401504 1393 ntBASIC15.18■□□□□ 0.02
SMARCA1P28370 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 AC090403.1-201ENST00000584546 1352 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC15.18■□□□□ 0.02
SMARCA1P28370 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SMARCA1P28370 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ANKRA2-201ENST00000296785 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
SMARCA1P28370 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 MDM1-204ENST00000411698 2472 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SMARCA1P28370 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SMARCA1P28370 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 C3orf56-201ENST00000624688 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 MIPEPP1-201ENST00000413533 2027 ntBASIC15.17■□□□□ 0.02
SMARCA1P28370 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.17■□□□□ 0.02
SMARCA1P28370 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 AC126335.2-201ENST00000623362 4637 ntBASIC15.17■□□□□ 0.02
SMARCA1P28370 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC15.17■□□□□ 0.02
SMARCA1P28370 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.17■□□□□ 0.02
SMARCA1P28370 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 AC114812.4-201ENST00000506676 757 ntBASIC15.17■□□□□ 0.02
SMARCA1P28370 PTK2-225ENST00000520892 571 ntTSL 4 BASIC15.17■□□□□ 0.02
SMARCA1P28370 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.17■□□□□ 0.02
SMARCA1P28370 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 PLXNA4-203ENST00000378539 2004 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SMARCA1P28370 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SMARCA1P28370 HEY2-202ENST00000368365 2461 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC15.17■□□□□ 0.02
SMARCA1P28370 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 LINC01801-202ENST00000590963 2077 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms