Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 LINC01529-204ENST00000636474 1715 ntBASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 AC145676.1-201ENST00000514988 2004 ntBASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 BID-214ENST00000617586 542 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA1Q9Y5H4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHGA1Q9Y5H4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHGA1Q9Y5H4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
PCDHGA1Q9Y5H4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PCDHGA1Q9Y5H4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 AP004607.4-201ENST00000530158 1459 ntBASIC21.38■■□□□ 1.01
PCDHGA1Q9Y5H4 AC144652.1-201ENST00000609974 1624 ntBASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 AC104771.1-201ENST00000603335 964 ntBASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA1Q9Y5H4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 KRT19P1-201ENST00000405746 1186 ntBASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA1Q9Y5H4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA1Q9Y5H4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 KRT18P11-201ENST00000435214 1283 ntBASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 AC006970.2-201ENST00000450065 779 ntBASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.34■■□□□ 1.01
PCDHGA1Q9Y5H4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHGA1Q9Y5H4 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.33■■□□□ 1.01
PCDHGA1Q9Y5H4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.33■■□□□ 1.01
PCDHGA1Q9Y5H4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA1Q9Y5H4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.33■■□□□ 1
PCDHGA1Q9Y5H4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA1Q9Y5H4 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms