Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHB3Q9Y5E6 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
PCDHB3Q9Y5E6 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 EP400NL-214ENST00000641289 2402 ntBASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 AL031432.3-201ENST00000607698 485 ntBASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHB3Q9Y5E6 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 SYT6-210ENST00000641643 1587 ntBASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHB3Q9Y5E6 C17orf82-201ENST00000623772 1530 ntBASIC21.58■■□□□ 1.04
PCDHB3Q9Y5E6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHB3Q9Y5E6 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.58■■□□□ 1.04
PCDHB3Q9Y5E6 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHB3Q9Y5E6 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 ALDH1A3-203ENST00000557963 1670 ntBASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 C1orf229-201ENST00000623686 2258 ntBASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 AC241377.3-202ENST00000626088 1088 ntBASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 AC241585.3-202ENST00000628937 1088 ntBASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 AC245100.8-202ENST00000629247 1058 ntBASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHB3Q9Y5E6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 AC099791.2-201ENST00000605725 427 ntBASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 MIR5787-201ENST00000611784 55 ntBASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 AC092666.2-201ENST00000613287 246 ntBASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PCDHB3Q9Y5E6 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 AL138724.1-201ENST00000606771 1088 ntBASIC21.54■■□□□ 1.04
PCDHB3Q9Y5E6 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms