Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN22Q9Y2R2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN22Q9Y2R2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN22Q9Y2R2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC25.54■■□□□ 1.68
PTPN22Q9Y2R2 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN22Q9Y2R2 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN22Q9Y2R2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 DUX4L4-201ENST00000566884 1269 ntBASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN22Q9Y2R2 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 AC093827.2-201ENST00000512654 315 ntBASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN22Q9Y2R2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 AC010501.1-201ENST00000606270 1962 ntBASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 KRT19P1-201ENST00000405746 1186 ntBASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTPN22Q9Y2R2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.5■■□□□ 1.67
PTPN22Q9Y2R2 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 MIR4651-201ENST00000582622 73 ntBASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.49■■□□□ 1.67
PTPN22Q9Y2R2 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 KRT18P11-201ENST00000435214 1283 ntBASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN22Q9Y2R2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 SPI1-203ENST00000533030 661 ntTSL 2 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
PTPN22Q9Y2R2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 AL121832.2-201ENST00000610979 668 ntBASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 MIR6089-201ENST00000616698 64 ntBASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.46■■□□□ 1.67
PTPN22Q9Y2R2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
PTPN22Q9Y2R2 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms