Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL356441.2-201ENST00000443009 864 ntBASIC17.89■□□□□ 0.45
FOXA2Q9Y261 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 CLDN5-201ENST00000403084 2357 ntBASIC17.89■□□□□ 0.45
FOXA2Q9Y261 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MIR6724-1-201ENST00000616420 92 ntBASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MIR6724-2-201ENST00000616483 92 ntBASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MIR6724-4-201ENST00000617390 92 ntBASIC17.88■□□□□ 0.45
FOXA2Q9Y261 MIR6724-3-201ENST00000622482 92 ntBASIC17.88■□□□□ 0.45
FOXA2Q9Y261 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA2Q9Y261 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA2Q9Y261 AC144652.1-201ENST00000609974 1624 ntBASIC17.87■□□□□ 0.45
FOXA2Q9Y261 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA2Q9Y261 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA2Q9Y261 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
FOXA2Q9Y261 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.83■□□□□ 0.45
FOXA2Q9Y261 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
FOXA2Q9Y261 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.83■□□□□ 0.45
FOXA2Q9Y261 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
FOXA2Q9Y261 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
FOXA2Q9Y261 AC137767.1-201ENST00000602918 1920 ntBASIC17.83■□□□□ 0.44
FOXA2Q9Y261 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
FOXA2Q9Y261 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA2Q9Y261 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA2Q9Y261 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA2Q9Y261 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
FOXA2Q9Y261 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
FOXA2Q9Y261 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 157.9 ms