Protein–RNA interactions for Protein: Q9P2I0

CPSF2, Cleavage and polyadenylation specificity factor subunit 2, humanhuman

Known RBP Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2Q9P2I0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 MIR4508-201ENST00000584178 70 ntBASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
CPSF2Q9P2I0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CPSF2Q9P2I0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
CPSF2Q9P2I0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CPSF2Q9P2I0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CPSF2Q9P2I0 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.14■■□□□ 1.14
CPSF2Q9P2I0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.14■■□□□ 1.14
CPSF2Q9P2I0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CPSF2Q9P2I0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 LINC00526-201ENST00000581067 1875 ntBASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CPSF2Q9P2I0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 AC103834.1-201ENST00000520383 144 ntBASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 AL353803.4-201ENST00000565882 1934 ntBASIC22.12■■□□□ 1.13
CPSF2Q9P2I0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 YBX1P4-201ENST00000392794 808 ntBASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CPSF2Q9P2I0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.1■■□□□ 1.13
CPSF2Q9P2I0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
CPSF2Q9P2I0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF2Q9P2I0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CPSF2Q9P2I0 AC103724.3-201ENST00000564481 992 ntBASIC22.09■■□□□ 1.13
CPSF2Q9P2I0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms