Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 AL356740.2-201ENST00000601559 647 ntBASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SEC61A2Q9H9S3 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 AL512631.2-201ENST00000604634 923 ntBASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SEC61A2Q9H9S3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 AC144652.1-201ENST00000609974 1624 ntBASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEC61A2Q9H9S3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SEC61A2Q9H9S3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
SEC61A2Q9H9S3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
SEC61A2Q9H9S3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 MIR4466-201ENST00000606121 54 ntBASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.76■□□□□ 0.75
SEC61A2Q9H9S3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
SEC61A2Q9H9S3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SEC61A2Q9H9S3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 AC008406.3-201ENST00000620001 1374 ntBASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 C1orf229-201ENST00000623686 2258 ntBASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SEC61A2Q9H9S3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SEC61A2Q9H9S3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SEC61A2Q9H9S3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms