Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.58
USP47Q96K76 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
USP47Q96K76 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
USP47Q96K76 MIR939-201ENST00000401314 82 ntBASIC31.19■■■□□ 2.58
USP47Q96K76 AF213884.3-201ENST00000563833 479 ntBASIC31.19■■■□□ 2.58
USP47Q96K76 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
USP47Q96K76 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP47Q96K76 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP47Q96K76 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC31.19■■■□□ 2.58
USP47Q96K76 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC31.17■■■□□ 2.58
USP47Q96K76 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC31.17■■■□□ 2.58
USP47Q96K76 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC31.17■■■□□ 2.58
USP47Q96K76 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
USP47Q96K76 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
USP47Q96K76 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP47Q96K76 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
USP47Q96K76 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
USP47Q96K76 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC31.16■■■□□ 2.58
USP47Q96K76 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
USP47Q96K76 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP47Q96K76 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
USP47Q96K76 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC31.15■■■□□ 2.58
USP47Q96K76 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC31.15■■■□□ 2.58
USP47Q96K76 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
USP47Q96K76 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC31.15■■■□□ 2.58
USP47Q96K76 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 AC005837.3-201ENST00000612163 286 ntBASIC31.15■■■□□ 2.58
USP47Q96K76 AL355001.2-201ENST00000620617 1191 ntBASIC31.15■■■□□ 2.58
USP47Q96K76 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC31.15■■■□□ 2.58
USP47Q96K76 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USP47Q96K76 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
USP47Q96K76 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC31.14■■■□□ 2.58
USP47Q96K76 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC31.14■■■□□ 2.58
USP47Q96K76 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP47Q96K76 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
USP47Q96K76 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
USP47Q96K76 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC31.14■■■□□ 2.57
USP47Q96K76 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC31.14■■■□□ 2.57
USP47Q96K76 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP47Q96K76 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP47Q96K76 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USP47Q96K76 BX842568.3-201ENST00000418104 571 ntBASIC31.13■■■□□ 2.57
USP47Q96K76 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC31.13■■■□□ 2.57
USP47Q96K76 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC31.13■■■□□ 2.57
USP47Q96K76 MAG-206ENST00000597035 542 ntTSL 4 BASIC31.13■■■□□ 2.57
USP47Q96K76 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
USP47Q96K76 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC31.12■■■□□ 2.57
USP47Q96K76 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.12■■■□□ 2.57
USP47Q96K76 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
USP47Q96K76 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
USP47Q96K76 AC027682.1-201ENST00000562846 899 ntBASIC31.12■■■□□ 2.57
USP47Q96K76 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
USP47Q96K76 STX4-202ENST00000394998 1498 ntTSL 2 BASIC31.12■■■□□ 2.57
USP47Q96K76 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP47Q96K76 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC31.11■■■□□ 2.57
USP47Q96K76 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP47Q96K76 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP47Q96K76 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC31.11■■■□□ 2.57
USP47Q96K76 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.11■■■□□ 2.57
USP47Q96K76 AL136967.2-201ENST00000623968 743 ntBASIC31.11■■■□□ 2.57
USP47Q96K76 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC31.11■■■□□ 2.57
USP47Q96K76 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP47Q96K76 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
USP47Q96K76 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC31.1■■■□□ 2.57
USP47Q96K76 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC31.1■■■□□ 2.57
USP47Q96K76 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
USP47Q96K76 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP47Q96K76 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC31.09■■■□□ 2.57
USP47Q96K76 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP47Q96K76 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP47Q96K76 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.09■■■□□ 2.57
USP47Q96K76 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC31.09■■■□□ 2.57
USP47Q96K76 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.09■■■□□ 2.57
USP47Q96K76 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC31.09■■■□□ 2.57
USP47Q96K76 RARA-203ENST00000394086 2008 ntTSL 2 BASIC31.09■■■□□ 2.57
USP47Q96K76 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
USP47Q96K76 C9orf163-202ENST00000624034 2573 ntBASIC31.09■■■□□ 2.57
USP47Q96K76 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
USP47Q96K76 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC31.08■■■□□ 2.57
USP47Q96K76 ME2-208ENST00000638937 2471 ntTSL 5 BASIC31.08■■■□□ 2.57
USP47Q96K76 AC099791.1-201ENST00000416440 715 ntBASIC31.08■■■□□ 2.57
USP47Q96K76 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
USP47Q96K76 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC31.08■■■□□ 2.57
USP47Q96K76 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
USP47Q96K76 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms