Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 AC126544.1-201ENST00000580842 1059 ntBASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLIP3Q96DZ5 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 FP325331.1-202ENST00000623531 1380 ntBASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.21■□□□□ 0.99
CLIP3Q96DZ5 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLIP3Q96DZ5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 IRS3P-201ENST00000223076 1006 ntBASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 AC133637.1-201ENST00000624115 1537 ntBASIC21.19■□□□□ 0.98
CLIP3Q96DZ5 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 AC144652.1-201ENST00000609974 1624 ntBASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP3Q96DZ5 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 LINC01529-204ENST00000636474 1715 ntBASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP3Q96DZ5 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 SLC47A1P1-202ENST00000449666 945 ntBASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 DUX4L4-201ENST00000566884 1269 ntBASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP3Q96DZ5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP3Q96DZ5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms