Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.99■■■□□ 2.23
RTF1Q92541 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
RTF1Q92541 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 AP005435.1-201ENST00000529293 1178 ntBASIC28.98■■■□□ 2.23
RTF1Q92541 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC28.98■■■□□ 2.23
RTF1Q92541 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
RTF1Q92541 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.98■■■□□ 2.23
RTF1Q92541 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
RTF1Q92541 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
RTF1Q92541 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC28.97■■■□□ 2.23
RTF1Q92541 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC28.97■■■□□ 2.23
RTF1Q92541 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
RTF1Q92541 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.97■■■□□ 2.23
RTF1Q92541 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
RTF1Q92541 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
RTF1Q92541 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.96■■■□□ 2.23
RTF1Q92541 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
RTF1Q92541 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.96■■■□□ 2.23
RTF1Q92541 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.96■■■□□ 2.23
RTF1Q92541 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
RTF1Q92541 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC28.96■■■□□ 2.23
RTF1Q92541 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC28.96■■■□□ 2.23
RTF1Q92541 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC28.96■■■□□ 2.23
RTF1Q92541 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.23
RTF1Q92541 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
RTF1Q92541 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
RTF1Q92541 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.95■■■□□ 2.22
RTF1Q92541 MIR572-201ENST00000384983 95 ntBASIC28.95■■■□□ 2.22
RTF1Q92541 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.95■■■□□ 2.22
RTF1Q92541 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC28.95■■■□□ 2.22
RTF1Q92541 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
RTF1Q92541 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.94■■■□□ 2.22
RTF1Q92541 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.94■■■□□ 2.22
RTF1Q92541 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
RTF1Q92541 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC28.94■■■□□ 2.22
RTF1Q92541 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
RTF1Q92541 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.94■■■□□ 2.22
RTF1Q92541 ANOS2P-203ENST00000472227 1816 ntBASIC28.94■■■□□ 2.22
RTF1Q92541 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.94■■■□□ 2.22
RTF1Q92541 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.93■■■□□ 2.22
RTF1Q92541 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.93■■■□□ 2.22
RTF1Q92541 SP2-202ENST00000613139 908 ntTSL 5 BASIC28.93■■■□□ 2.22
RTF1Q92541 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.93■■■□□ 2.22
RTF1Q92541 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.93■■■□□ 2.22
RTF1Q92541 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.93■■■□□ 2.22
RTF1Q92541 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
RTF1Q92541 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC28.92■■■□□ 2.22
RTF1Q92541 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
RTF1Q92541 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
RTF1Q92541 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC28.92■■■□□ 2.22
RTF1Q92541 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.92■■■□□ 2.22
RTF1Q92541 AC087623.3-201ENST00000607047 1098 ntBASIC28.92■■■□□ 2.22
RTF1Q92541 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
RTF1Q92541 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
RTF1Q92541 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.91■■■□□ 2.22
RTF1Q92541 AL358852.1-201ENST00000623174 1268 ntBASIC28.91■■■□□ 2.22
RTF1Q92541 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
RTF1Q92541 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
RTF1Q92541 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RTF1Q92541 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RTF1Q92541 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RTF1Q92541 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RTF1Q92541 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC28.9■■■□□ 2.22
RTF1Q92541 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.9■■■□□ 2.22
RTF1Q92541 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
RTF1Q92541 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC28.9■■■□□ 2.22
RTF1Q92541 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC28.89■■■□□ 2.22
RTF1Q92541 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC28.89■■■□□ 2.22
RTF1Q92541 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC28.89■■■□□ 2.22
RTF1Q92541 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC28.89■■■□□ 2.22
RTF1Q92541 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
RTF1Q92541 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC28.89■■■□□ 2.22
RTF1Q92541 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.89■■■□□ 2.22
RTF1Q92541 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC28.88■■■□□ 2.21
RTF1Q92541 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC28.88■■■□□ 2.21
RTF1Q92541 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
RTF1Q92541 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
RTF1Q92541 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC28.88■■■□□ 2.21
RTF1Q92541 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.88■■■□□ 2.21
RTF1Q92541 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
RTF1Q92541 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.88■■■□□ 2.21
RTF1Q92541 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.88■■■□□ 2.21
RTF1Q92541 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.88■■■□□ 2.21
RTF1Q92541 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
RTF1Q92541 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.88■■■□□ 2.21
RTF1Q92541 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.87■■■□□ 2.21
RTF1Q92541 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
RTF1Q92541 AC092068.2-201ENST00000590491 1708 ntBASIC28.87■■■□□ 2.21
RTF1Q92541 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms