Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NKX2-3Q8TAU0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 DUX4L4-201ENST00000566884 1269 ntBASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 pRNA.6-201ENST00000610482 90 ntBASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 pRNA.5-201ENST00000612139 90 ntBASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 pRNA.11-201ENST00000618423 90 ntBASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 pRNA.13-201ENST00000619112 90 ntBASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX2-3Q8TAU0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
NKX2-3Q8TAU0 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 AC034268.1-201ENST00000441047 882 ntBASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 AC022517.1-201ENST00000592429 346 ntBASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 DUSP8P3-201ENST00000399571 1760 ntBASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.32■■□□□ 1.8
NKX2-3Q8TAU0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 LINC01529-204ENST00000636474 1715 ntBASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 FP325331.1-202ENST00000623531 1380 ntBASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX2-3Q8TAU0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 AC241377.3-202ENST00000626088 1088 ntBASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 AC241585.3-202ENST00000628937 1088 ntBASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 AC245100.8-202ENST00000629247 1058 ntBASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.3■■□□□ 1.8
NKX2-3Q8TAU0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 IKBKGP1-201ENST00000612193 1073 ntBASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX2-3Q8TAU0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 AL499627.2-201ENST00000606283 725 ntBASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC26.28■■□□□ 1.8
NKX2-3Q8TAU0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX2-3Q8TAU0 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
NKX2-3Q8TAU0 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.27■■□□□ 1.8
NKX2-3Q8TAU0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX2-3Q8TAU0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
NKX2-3Q8TAU0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms