Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHFQ7M4L6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHFQ7M4L6 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 AC010980.1-201ENST00000587192 1142 ntBASIC19.97■□□□□ 0.79
SHFQ7M4L6 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.97■□□□□ 0.79
SHFQ7M4L6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHFQ7M4L6 AC080038.3-201ENST00000623346 1952 ntBASIC19.97■□□□□ 0.79
SHFQ7M4L6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 AC004448.1-201ENST00000458332 883 ntBASIC19.96■□□□□ 0.79
SHFQ7M4L6 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SHFQ7M4L6 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
SHFQ7M4L6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHFQ7M4L6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SHFQ7M4L6 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHFQ7M4L6 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHFQ7M4L6 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.95■□□□□ 0.78
SHFQ7M4L6 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SHFQ7M4L6 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.95■□□□□ 0.78
SHFQ7M4L6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SHFQ7M4L6 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SHFQ7M4L6 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.94■□□□□ 0.78
SHFQ7M4L6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.94■□□□□ 0.78
SHFQ7M4L6 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.94■□□□□ 0.78
SHFQ7M4L6 C11orf96-202ENST00000528572 1834 ntBASIC19.94■□□□□ 0.78
SHFQ7M4L6 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.94■□□□□ 0.78
SHFQ7M4L6 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHFQ7M4L6 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 AC092053.2-201ENST00000640557 1818 ntBASIC19.93■□□□□ 0.78
SHFQ7M4L6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHFQ7M4L6 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 MIR4508-201ENST00000584178 70 ntBASIC19.93■□□□□ 0.78
SHFQ7M4L6 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHFQ7M4L6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SHFQ7M4L6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SHFQ7M4L6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 FBXW4P1-201ENST00000426721 2239 ntBASIC19.92■□□□□ 0.78
SHFQ7M4L6 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHFQ7M4L6 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHFQ7M4L6 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SHFQ7M4L6 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 AC012354.3-201ENST00000623734 483 ntBASIC19.92■□□□□ 0.78
SHFQ7M4L6 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHFQ7M4L6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
SHFQ7M4L6 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SHFQ7M4L6 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.91■□□□□ 0.78
SHFQ7M4L6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHFQ7M4L6 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SHFQ7M4L6 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.9■□□□□ 0.78
SHFQ7M4L6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHFQ7M4L6 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.9■□□□□ 0.78
SHFQ7M4L6 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.9■□□□□ 0.78
SHFQ7M4L6 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHFQ7M4L6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SHFQ7M4L6 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.9■□□□□ 0.78
SHFQ7M4L6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SHFQ7M4L6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.89■□□□□ 0.77
SHFQ7M4L6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.89■□□□□ 0.77
SHFQ7M4L6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.89■□□□□ 0.77
SHFQ7M4L6 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHFQ7M4L6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.88■□□□□ 0.77
SHFQ7M4L6 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms