Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 MIR4466-201ENST00000606121 54 ntBASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 AC092171.4-201ENST00000609130 632 ntBASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 AC009086.3-201ENST00000623486 1008 ntBASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM40Q6P9F5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 AL117328.2-201ENST00000624617 1940 ntBASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM40Q6P9F5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 AC099791.2-201ENST00000605725 427 ntBASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.18■□□□□ 0.98
TRIM40Q6P9F5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 AC233723.2-201ENST00000623798 2106 ntBASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
TRIM40Q6P9F5 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 AL136116.3-201ENST00000402907 1138 ntBASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM40Q6P9F5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 AC008406.3-201ENST00000620001 1374 ntBASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM40Q6P9F5 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM40Q6P9F5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM40Q6P9F5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM40Q6P9F5 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM40Q6P9F5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.14■□□□□ 0.98
TRIM40Q6P9F5 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms