Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
KRT40Q6A162 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.65■■□□□ 1.7
KRT40Q6A162 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
KRT40Q6A162 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
KRT40Q6A162 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
KRT40Q6A162 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
KRT40Q6A162 AL356740.2-201ENST00000601559 647 ntBASIC25.64■■□□□ 1.7
KRT40Q6A162 AC233723.2-201ENST00000623798 2106 ntBASIC25.64■■□□□ 1.69
KRT40Q6A162 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
KRT40Q6A162 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
KRT40Q6A162 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
KRT40Q6A162 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
KRT40Q6A162 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.63■■□□□ 1.69
KRT40Q6A162 AL512631.2-201ENST00000604634 923 ntBASIC25.63■■□□□ 1.69
KRT40Q6A162 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.63■■□□□ 1.69
KRT40Q6A162 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
KRT40Q6A162 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
KRT40Q6A162 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC25.63■■□□□ 1.69
KRT40Q6A162 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
KRT40Q6A162 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
KRT40Q6A162 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.63■■□□□ 1.69
KRT40Q6A162 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
KRT40Q6A162 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
KRT40Q6A162 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.63■■□□□ 1.69
KRT40Q6A162 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC25.62■■□□□ 1.69
KRT40Q6A162 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.62■■□□□ 1.69
KRT40Q6A162 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.62■■□□□ 1.69
KRT40Q6A162 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
KRT40Q6A162 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
KRT40Q6A162 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
KRT40Q6A162 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
KRT40Q6A162 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.61■■□□□ 1.69
KRT40Q6A162 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
KRT40Q6A162 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
KRT40Q6A162 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
KRT40Q6A162 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
KRT40Q6A162 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.59■■□□□ 1.69
KRT40Q6A162 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
KRT40Q6A162 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
KRT40Q6A162 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.59■■□□□ 1.69
KRT40Q6A162 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.59■■□□□ 1.69
KRT40Q6A162 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.59■■□□□ 1.69
KRT40Q6A162 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.59■■□□□ 1.69
KRT40Q6A162 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC25.58■■□□□ 1.69
KRT40Q6A162 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC25.58■■□□□ 1.69
KRT40Q6A162 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
KRT40Q6A162 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
KRT40Q6A162 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.57■■□□□ 1.68
KRT40Q6A162 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 PBX2P1-201ENST00000493219 1291 ntBASIC25.57■■□□□ 1.68
KRT40Q6A162 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.57■■□□□ 1.68
KRT40Q6A162 AC142381.2-201ENST00000566120 298 ntBASIC25.57■■□□□ 1.68
KRT40Q6A162 AC104564.3-201ENST00000582367 638 ntBASIC25.57■■□□□ 1.68
KRT40Q6A162 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms