Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC58Q4VC31 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.69■□□□□ 0.74
CCDC58Q4VC31 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC58Q4VC31 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 AC092053.2-201ENST00000640557 1818 ntBASIC19.68■□□□□ 0.74
CCDC58Q4VC31 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC58Q4VC31 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 AL353803.4-201ENST00000565882 1934 ntBASIC19.67■□□□□ 0.74
CCDC58Q4VC31 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC58Q4VC31 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 AF106564.1-201ENST00000607058 2553 ntBASIC19.66■□□□□ 0.74
CCDC58Q4VC31 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 AC129492.7-201ENST00000622992 756 ntBASIC19.66■□□□□ 0.74
CCDC58Q4VC31 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC58Q4VC31 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 AC139530.1-201ENST00000575312 1977 ntBASIC19.65■□□□□ 0.74
CCDC58Q4VC31 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC58Q4VC31 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms