Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 AC009086.3-201ENST00000623486 1008 ntBASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 HLA-L-211ENST00000482052 1765 ntBASIC25.69■■□□□ 1.7
CCDC144BQ3MJ40 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 AL162430.1-201ENST00000480705 870 ntBASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC144BQ3MJ40 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 AC233992.3-201ENST00000607491 485 ntBASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC144BQ3MJ40 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC144BQ3MJ40 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC144BQ3MJ40 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CCDC144BQ3MJ40 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.64■■□□□ 1.7
CCDC144BQ3MJ40 BX842568.3-201ENST00000418104 571 ntBASIC25.64■■□□□ 1.7
CCDC144BQ3MJ40 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.64■■□□□ 1.69
CCDC144BQ3MJ40 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 AL117328.2-201ENST00000624617 1940 ntBASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CCDC144BQ3MJ40 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.62■■□□□ 1.69
CCDC144BQ3MJ40 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 AL161729.1-201ENST00000604104 1402 ntBASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 EP400NL-214ENST00000641289 2402 ntBASIC25.61■■□□□ 1.69
CCDC144BQ3MJ40 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC144BQ3MJ40 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms