Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC25.91■■□□□ 1.74
CTCFP49711 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC25.91■■□□□ 1.74
CTCFP49711 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CTCFP49711 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.9■■□□□ 1.74
CTCFP49711 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.9■■□□□ 1.74
CTCFP49711 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC25.9■■□□□ 1.74
CTCFP49711 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
CTCFP49711 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
CTCFP49711 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
CTCFP49711 OR2I1P-207ENST00000453522 948 ntBASIC25.9■■□□□ 1.74
CTCFP49711 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC25.9■■□□□ 1.74
CTCFP49711 AC098934.4-201ENST00000564127 592 ntBASIC25.9■■□□□ 1.74
CTCFP49711 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.9■■□□□ 1.74
CTCFP49711 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.74
CTCFP49711 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTCFP49711 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CTCFP49711 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC25.89■■□□□ 1.74
CTCFP49711 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC25.89■■□□□ 1.74
CTCFP49711 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
CTCFP49711 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CTCFP49711 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
CTCFP49711 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 MAX-217ENST00000557277 728 ntTSL 3 BASIC25.88■■□□□ 1.73
CTCFP49711 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.88■■□□□ 1.73
CTCFP49711 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CTCFP49711 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.87■■□□□ 1.73
CTCFP49711 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CTCFP49711 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CTCFP49711 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CTCFP49711 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC25.87■■□□□ 1.73
CTCFP49711 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.87■■□□□ 1.73
CTCFP49711 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC25.87■■□□□ 1.73
CTCFP49711 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC25.87■■□□□ 1.73
CTCFP49711 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25.87■■□□□ 1.73
CTCFP49711 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.87■■□□□ 1.73
CTCFP49711 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CTCFP49711 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.73
CTCFP49711 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CTCFP49711 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.86■■□□□ 1.73
CTCFP49711 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC25.86■■□□□ 1.73
CTCFP49711 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CTCFP49711 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC25.86■■□□□ 1.73
CTCFP49711 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.86■■□□□ 1.73
CTCFP49711 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
CTCFP49711 AL158047.1-201ENST00000445918 881 ntBASIC25.86■■□□□ 1.73
CTCFP49711 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
CTCFP49711 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CTCFP49711 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.86■■□□□ 1.73
CTCFP49711 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CTCFP49711 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC25.85■■□□□ 1.73
CTCFP49711 AF201337.1-201ENST00000520239 748 ntBASIC25.85■■□□□ 1.73
CTCFP49711 SLC7A5P1-201ENST00000568957 537 ntBASIC25.85■■□□□ 1.73
CTCFP49711 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
CTCFP49711 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
CTCFP49711 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.84■■□□□ 1.73
CTCFP49711 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.84■■□□□ 1.73
CTCFP49711 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.84■■□□□ 1.73
CTCFP49711 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.84■■□□□ 1.73
CTCFP49711 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.84■■□□□ 1.73
CTCFP49711 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CTCFP49711 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CTCFP49711 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CTCFP49711 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CTCFP49711 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CTCFP49711 ECEL1P3-201ENST00000427961 737 ntBASIC25.83■■□□□ 1.73
CTCFP49711 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
CTCFP49711 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CTCFP49711 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CTCFP49711 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CTCFP49711 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
CTCFP49711 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CTCFP49711 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
CTCFP49711 AL022069.1-201ENST00000568025 1636 ntBASIC25.82■■□□□ 1.72
CTCFP49711 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC25.82■■□□□ 1.72
CTCFP49711 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC25.82■■□□□ 1.72
CTCFP49711 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.82■■□□□ 1.72
CTCFP49711 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC25.82■■□□□ 1.72
CTCFP49711 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CTCFP49711 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.82■■□□□ 1.72
CTCFP49711 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.82■■□□□ 1.72
CTCFP49711 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
CTCFP49711 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC25.81■■□□□ 1.72
CTCFP49711 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CTCFP49711 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC25.81■■□□□ 1.72
CTCFP49711 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC25.81■■□□□ 1.72
CTCFP49711 AC142381.4-202ENST00000563973 229 ntBASIC25.81■■□□□ 1.72
CTCFP49711 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.81■■□□□ 1.72
CTCFP49711 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC25.81■■□□□ 1.72
CTCFP49711 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CTCFP49711 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CTCFP49711 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms