Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.44■□□□□ 0.7
SOX2P48431 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 AC004448.1-201ENST00000458332 883 ntBASIC19.44■□□□□ 0.7
SOX2P48431 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.44■□□□□ 0.7
SOX2P48431 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX2P48431 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX2P48431 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.44■□□□□ 0.7
SOX2P48431 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
SOX2P48431 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX2P48431 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX2P48431 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SOX2P48431 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX2P48431 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SOX2P48431 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX2P48431 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SOX2P48431 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX2P48431 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX2P48431 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX2P48431 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SOX2P48431 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX2P48431 AC139530.1-201ENST00000575312 1977 ntBASIC19.43■□□□□ 0.7
SOX2P48431 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SOX2P48431 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.42■□□□□ 0.7
SOX2P48431 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SOX2P48431 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.42■□□□□ 0.7
SOX2P48431 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.42■□□□□ 0.7
SOX2P48431 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX2P48431 AC092053.2-201ENST00000640557 1818 ntBASIC19.41■□□□□ 0.7
SOX2P48431 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.41■□□□□ 0.7
SOX2P48431 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX2P48431 AC080038.3-201ENST00000623346 1952 ntBASIC19.41■□□□□ 0.7
SOX2P48431 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SOX2P48431 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX2P48431 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SOX2P48431 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SOX2P48431 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SOX2P48431 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX2P48431 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SOX2P48431 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX2P48431 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX2P48431 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.4■□□□□ 0.7
SOX2P48431 KRT18P24-201ENST00000344739 1156 ntBASIC19.4■□□□□ 0.7
SOX2P48431 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.4■□□□□ 0.7
SOX2P48431 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SOX2P48431 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX2P48431 AL137060.1-201ENST00000618151 2648 ntBASIC19.4■□□□□ 0.7
SOX2P48431 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SOX2P48431 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SOX2P48431 C11orf96-202ENST00000528572 1834 ntBASIC19.39■□□□□ 0.7
SOX2P48431 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.39■□□□□ 0.7
SOX2P48431 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.39■□□□□ 0.69
SOX2P48431 PVT1_1.1-201ENST00000615125 194 ntBASIC19.39■□□□□ 0.69
SOX2P48431 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SOX2P48431 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.39■□□□□ 0.69
SOX2P48431 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SOX2P48431 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX2P48431 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.38■□□□□ 0.69
SOX2P48431 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.38■□□□□ 0.69
SOX2P48431 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SOX2P48431 NTF6A-201ENST00000591175 560 ntBASIC19.38■□□□□ 0.69
SOX2P48431 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms